Gene annotation
Transcriptome id Sobic.003G409200.1
Synonym Sb03g044390
Functional annotation protein of unknown function, DUF618 domain containing protein, expressed
UniProt C5XGX1
Pfam PF04818
Panther DB PTHR12460 PTHR12460:SF6
NCBI CDD KOG2669; Regulator of nuclear mRNA
KEGG Orthology K15559; regulator of Ty1 transposition protein 103
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26990 : ENTH/VHS family protein
RAP-DB (Rice) LOC_Os01g70060.1 : protein of unknown function, DUF618 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039261 , Zm00025a026217
Brachypodium PNT73510
Barley HORVU3Hr1G095600.2 , HORVU3Hr1G095600.1 , HORVU3Hr1G095600.3 , HORVU3Hr1G095600.5 , HORVU3Hr1G095600.4
Wheat TraesCS3A02G437300 , TraesCS3D02G429500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
2 Sobic.010G215900 type II intron maturase protein, putative, expressed -
3 Sobic.004G111000 bromodomain containing protein, expressed -
4 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
5 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
6 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
7 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
8 Sobic.010G279900 PHD-finger domain containing protein, expressed -
9 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
10 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
11 Sobic.004G155600 dnaJ domain containing protein, expressed -
12 Sobic.005G200800 homeobox domain containing protein, expressed -
13 Sobic.009G255600 cleavage and polyadenylation specificity factor, putative, expressed K10610: DNA damage-binding protein 1
14 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
15 Sobic.010G186600 expressed protein -
16 Sobic.008G147200 tubulin, putative, expressed -
17 Sobic.007G183300 expressed protein -
18 Sobic.004G156500 expressed protein -
19 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
20 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1


Gene co-expression network
sample Sobic003G409200 Sobic003G409200 Sobic001G346900 Sobic001G346900 Sobic003G409200--Sobic001G346900 Sobic010G215900 Sobic010G215900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic004G285000 Sobic004G285000 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic004G086200 Sobic004G086200 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic010G215900--Sobic003G409200 Sobic010G215900--Sobic004G285000 Sobic010G215900--Sobic004G111000 Sobic010G215900--Sobic001G346900 Sobic001G013300 Sobic001G013300 Sobic010G215900--Sobic001G013300 Sobic006G226300 Sobic006G226300 Sobic010G215900--Sobic006G226300 Sobic010G215900--Sobic008G147200 Sobic010G215900--Sobic003G042400 Sobic004G155600 Sobic004G155600 Sobic010G215900--Sobic004G155600 Sobic004G111000--Sobic004G285000 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic007G044100 Sobic007G044100 Sobic004G111000--Sobic007G044100 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic005G079800 Sobic005G079800 Sobic003G427100--Sobic005G079800 Sobic003G427100--Sobic007G044100 Sobic003G427100--Sobic003G409200 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic002G153700 Sobic002G153700 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G438900 Sobic003G438900 Sobic003G427100--Sobic003G438900 Sobic003G307000 Sobic003G307000 Sobic003G427100--Sobic003G307000 Sobic002G043100 Sobic002G043100 Sobic001G501800--Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic001G501800--Sobic004G107200 Sobic001G501800--Sobic005G200800 Sobic002G425500 Sobic002G425500 Sobic001G501800--Sobic002G425500 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic003G101500 Sobic003G101500 Sobic001G501800--Sobic003G101500 Sobic003G360400 Sobic003G360400 Sobic001G501800--Sobic003G360400 Sobic001G501800--Sobic001G346900 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic004G285000--Sobic007G044100 Sobic004G285000--Sobic001G013300 Sobic010G279900--Sobic004G156500 Sobic010G279900--Sobic007G183300 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic010G186600 Sobic010G186600 Sobic002G145800--Sobic010G186600
Octagon: transcription factors


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