Gene annotation
Transcriptome id Sobic.007G044100.1
Synonym RNA_POL_II_LSRNA_POL_II_LS, RPB1, Sb07g003680, NRPB1, RNA_POL_II_LS
Functional annotation DNA-directed RNA polymerase III subunit RPC1, putative, expressed
UniProt C5YGY9
Pfam PF05001 PF05000 PF04983 PF04990 PF04992 PF00623 PF04998 PF04997
Panther DB PTHR19376 PTHR19376:SF37
NCBI CDD -
KEGG Orthology K03006; RPB1, DNA-directed RNA polymerase II subunit RPB1
Gene Ontology GO:0006366; transcription by RNA polymerase II GO:0005665RNA polymerase II, core complex GO:0003677DNA binding GO:0006351transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G35800 : RNA polymerase II large subunit
RAP-DB (Rice) LOC_Os05g05860.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a055172
Brachypodium KQJ95346 , KQK11890
Barley HORVU2Hr1G126750.3 , HORVU2Hr1G126750.2 , HORVU2Hr1G126750.1 , HORVU2Hr1G126750.5 , HORVU2Hr1G126750.4 , HORVU5Hr1G114400.1 , HORVU5Hr1G114400.3 , HORVU5Hr1G114400.2 , HORVU5Hr1G114400.20 , HORVU2Hr1G126750.7 , HORVU5Hr1G114340.1 , HORVU5Hr1G114350.1 , HORVU5Hr1G114400.19 , HORVU5Hr1G114400.18 , HORVU5Hr1G114400.15 , HORVU5Hr1G114400.17 , HORVU5Hr1G114400.16 , HORVU7Hr1G037130.3 , HORVU7Hr1G037130.2 , HORVU7Hr1G037130.1
Wheat TraesCS7B02G202000 , TraesCS5D02G499000 , TraesCS7B02G202000 , TraesCS2D02G427500 , TraesCS2D02G427500 , TraesCS7A02G301900 , TraesCS7D02G297100 , TraesCS5D02G498900 , TraesCS2A02G558100 , TraesCS2B02G622300 , TraesCS5B02G499000 , TraesCS7D02G182500 , TraesCS5B02G498800 , TraesCS7A02G180700 , TraesCS5B02G498800 , TraesCS2D02G571500 , TraesCS5B02G498800 , TraesCS7B02G085700
Populus PNT36095


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cDNA sequences
Sobic.007G044100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
2 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
3 Sobic.004G111000 bromodomain containing protein, expressed -
4 Sobic.001G090800 PHD finger family protein, putative, expressed -
5 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
6 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
7 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
8 Sobic.010G279900 PHD-finger domain containing protein, expressed -
9 Sobic.002G234600 ZOS9-15 - C2H2 zinc finger protein, expressed -
10 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
11 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
12 Sobic.004G156500 expressed protein -
13 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
14 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
15 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
16 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
17 Sobic.001G398800 FHA domain containing protein, putative, expressed -
18 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
19 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
20 Sobic.010G215900 type II intron maturase protein, putative, expressed -


Gene co-expression network
sample Sobic007G044100 Sobic007G044100 Sobic003G427100 Sobic003G427100 Sobic007G044100--Sobic003G427100 Sobic004G285000 Sobic004G285000 Sobic007G044100--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic007G044100--Sobic004G111000 Sobic001G090800 Sobic001G090800 Sobic007G044100--Sobic001G090800 Sobic003G307000 Sobic003G307000 Sobic007G044100--Sobic003G307000 Sobic001G134300 Sobic001G134300 Sobic007G044100--Sobic001G134300 Sobic003G409200 Sobic003G409200 Sobic007G044100--Sobic003G409200 Sobic010G279900 Sobic010G279900 Sobic007G044100--Sobic010G279900 Sobic002G234600 Sobic002G234600 Sobic007G044100--Sobic002G234600 Sobic005G079800 Sobic005G079800 Sobic003G427100--Sobic005G079800 Sobic003G427100--Sobic007G044100 Sobic003G427100--Sobic003G409200 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic002G153700 Sobic002G153700 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G438900 Sobic003G438900 Sobic003G427100--Sobic003G438900 Sobic003G427100--Sobic003G307000 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic004G111000--Sobic004G285000 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic004G111000--Sobic007G044100 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic001G090800--Sobic001G134300 Sobic010G065300 Sobic010G065300 Sobic001G090800--Sobic010G065300 Sobic001G090800--Sobic007G044100 Sobic010G001100 Sobic010G001100 Sobic001G090800--Sobic010G001100 Sobic001G090800--Sobic002G153700 Sobic001G090800--Sobic010G279900 Sobic001G306900 Sobic001G306900 Sobic001G090800--Sobic001G306900 Sobic003G293200 Sobic003G293200 Sobic001G090800--Sobic003G293200 Sobic005G163100 Sobic005G163100 Sobic001G090800--Sobic005G163100 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic003G307000--Sobic002G153700 Sobic003G445400 Sobic003G445400 Sobic003G307000--Sobic003G445400 Sobic009G000500 Sobic009G000500 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic003G307000--Sobic010G065300 Sobic001G134300--Sobic010G065300 Sobic001G134300--Sobic001G306900 Sobic001G134300--Sobic010G001100 Sobic001G134300--Sobic004G156500 Sobic001G134300--Sobic004G086200 Sobic001G134300--Sobic001G398800 Sobic001G134300--Sobic001G090800 Sobic001G134300--Sobic001G346900 Sobic001G134300--Sobic002G153700 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic010G279900--Sobic004G156500 Sobic007G183300 Sobic007G183300 Sobic010G279900--Sobic007G183300 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic002G234600--Sobic001G134300 Sobic009G129600 Sobic009G129600 Sobic002G234600--Sobic009G129600 Sobic010G077500 Sobic010G077500 Sobic002G234600--Sobic010G077500 Sobic002G063900 Sobic002G063900 Sobic002G234600--Sobic002G063900 Sobic002G234600--Sobic004G156500 Sobic002G234600--Sobic004G285000 Sobic002G234600--Sobic007G044100 Sobic005G200800 Sobic005G200800 Sobic002G234600--Sobic005G200800 Sobic008G058800 Sobic008G058800 Sobic002G234600--Sobic008G058800
Octagon: transcription factors


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