Gene annotation
Transcriptome id Sobic.001G090800.1
Synonym Sb01g008195
Functional annotation PHD finger family protein, putative, expressed
UniProt A0A1Z5S4W8
Pfam PF16135
Panther DB PTHR24098 PTHR24098:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05380 : Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
RAP-DB (Rice) LOC_Os03g53630.1 : PHD finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a008136 , Zm00025a016815
Brachypodium -
Barley HORVU5Hr1G094760.10 , HORVU5Hr1G094760.6 , HORVU5Hr1G094760.5 , HORVU5Hr1G094760.4 , HORVU5Hr1G094760.3 , HORVU5Hr1G094760.2 , HORVU5Hr1G094760.1 , HORVU5Hr1G094760.9 , HORVU5Hr1G094760.8
Wheat TraesCS5B02G391200 , TraesCS5A02G386300 , TraesCS5A02G386300 , TraesCS5D02G396100 , TraesCS5D02G396100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
2 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
3 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
4 Sobic.010G001100 chromo domain containing protein, expressed -
5 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
6 Sobic.010G279900 PHD-finger domain containing protein, expressed -
7 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
8 Sobic.003G293200 plus-3 domain containing protein, expressed -
9 Sobic.005G163100 dnaJ domain containing protein, expressed -
10 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
11 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
12 Sobic.001G398800 FHA domain containing protein, putative, expressed -
13 Sobic.002G422100 EMB1011, putative, expressed K14317: NUP214, nuclear pore complex protein Nup214
14 Sobic.004G156500 expressed protein -
15 Sobic.004G111000 bromodomain containing protein, expressed -
16 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
17 Sobic.001G219900 expressed protein -
18 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
19 Sobic.005G200800 homeobox domain containing protein, expressed -
20 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2


Gene co-expression network
sample Sobic001G090800 Sobic001G090800 Sobic001G134300 Sobic001G134300 Sobic001G090800--Sobic001G134300 Sobic010G065300 Sobic010G065300 Sobic001G090800--Sobic010G065300 Sobic007G044100 Sobic007G044100 Sobic001G090800--Sobic007G044100 Sobic010G001100 Sobic010G001100 Sobic001G090800--Sobic010G001100 Sobic002G153700 Sobic002G153700 Sobic001G090800--Sobic002G153700 Sobic010G279900 Sobic010G279900 Sobic001G090800--Sobic010G279900 Sobic001G306900 Sobic001G306900 Sobic001G090800--Sobic001G306900 Sobic003G293200 Sobic003G293200 Sobic001G090800--Sobic003G293200 Sobic005G163100 Sobic005G163100 Sobic001G090800--Sobic005G163100 Sobic001G134300--Sobic010G065300 Sobic001G134300--Sobic001G306900 Sobic001G134300--Sobic010G001100 Sobic004G156500 Sobic004G156500 Sobic001G134300--Sobic004G156500 Sobic004G086200 Sobic004G086200 Sobic001G134300--Sobic004G086200 Sobic001G398800 Sobic001G398800 Sobic001G134300--Sobic001G398800 Sobic001G134300--Sobic001G090800 Sobic001G346900 Sobic001G346900 Sobic001G134300--Sobic001G346900 Sobic001G134300--Sobic002G153700 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic010G065300--Sobic001G134300 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic003G427100 Sobic003G427100 Sobic007G044100--Sobic003G427100 Sobic004G285000 Sobic004G285000 Sobic007G044100--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic007G044100--Sobic004G111000 Sobic007G044100--Sobic001G090800 Sobic003G307000 Sobic003G307000 Sobic007G044100--Sobic003G307000 Sobic007G044100--Sobic001G134300 Sobic003G409200 Sobic003G409200 Sobic007G044100--Sobic003G409200 Sobic007G044100--Sobic010G279900 Sobic002G234600 Sobic002G234600 Sobic007G044100--Sobic002G234600 Sobic010G001100--Sobic010G065300 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic010G001100--Sobic003G293200 Sobic004G242400 Sobic004G242400 Sobic010G001100--Sobic004G242400 Sobic009G109200 Sobic009G109200 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic009G256300 Sobic009G256300 Sobic010G001100--Sobic009G256300 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic002G153700--Sobic009G119000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic002G153700--Sobic001G306900 Sobic010G279900--Sobic004G156500 Sobic007G183300 Sobic007G183300 Sobic010G279900--Sobic007G183300 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic003G416700 Sobic003G416700 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic006G210000 Sobic006G210000 Sobic005G163100--Sobic006G210000 Sobic005G163100--Sobic001G134300 Sobic005G163100--Sobic010G001100 Sobic003G133900 Sobic003G133900 Sobic005G163100--Sobic003G133900 Sobic004G155600 Sobic004G155600 Sobic005G163100--Sobic004G155600 Sobic004G246100 Sobic004G246100 Sobic005G163100--Sobic004G246100 Sobic005G163100--Sobic001G090800 Sobic004G355800 Sobic004G355800 Sobic005G163100--Sobic004G355800 Sobic001G014300 Sobic001G014300 Sobic005G163100--Sobic001G014300
Octagon: transcription factors


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