Gene annotation
Transcriptome id Sobic.002G234600.1,Sobic.002G234600.2
Synonym Sb02g027370, ATMBD8, MBD8
Functional annotation ZOS9-15 - C2H2 zinc finger protein, expressed
UniProt A0A1B6QD38 , C5X330
Pfam -
Panther DB PTHR17384 PTHR17384:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005886; plasma membrane


Orthologs (automatic annotation)
TAIR AT1G22310 : methyl-CPG-binding domain 8
RAP-DB (Rice) LOC_Os09g29750.1 : ZOS9-15 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a014132 , Zm00025a033713 , Zm00025a004954
Brachypodium KQJ90621
Barley HORVU5Hr1G070450.4 , HORVU5Hr1G070450.3 , HORVU5Hr1G070450.1
Wheat TraesCS5D02G257700 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5B02G248100 , TraesCS5A02G250100
Populus -


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cDNA sequences
Sobic.002G234600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
2 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
3 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
4 Sobic.002G063900 zinc ion binding protein, putative, expressed -
5 Sobic.004G156500 expressed protein -
6 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
7 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
8 Sobic.005G200800 homeobox domain containing protein, expressed -
9 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
10 Sobic.010G279900 PHD-finger domain containing protein, expressed -
11 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
12 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
13 Sobic.001G398800 FHA domain containing protein, putative, expressed -
14 Sobic.003G416700 homeobox domain containing protein, expressed -
15 Sobic.003G212900 zinc ion binding protein, putative, expressed -
16 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
17 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
18 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
19 Sobic.007G183300 expressed protein -
20 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1


Gene co-expression network
sample Sobic002G234600 Sobic002G234600 Sobic001G134300 Sobic001G134300 Sobic002G234600--Sobic001G134300 Sobic009G129600 Sobic009G129600 Sobic002G234600--Sobic009G129600 Sobic010G077500 Sobic010G077500 Sobic002G234600--Sobic010G077500 Sobic002G063900 Sobic002G063900 Sobic002G234600--Sobic002G063900 Sobic004G156500 Sobic004G156500 Sobic002G234600--Sobic004G156500 Sobic004G285000 Sobic004G285000 Sobic002G234600--Sobic004G285000 Sobic007G044100 Sobic007G044100 Sobic002G234600--Sobic007G044100 Sobic005G200800 Sobic005G200800 Sobic002G234600--Sobic005G200800 Sobic008G058800 Sobic008G058800 Sobic002G234600--Sobic008G058800 Sobic010G065300 Sobic010G065300 Sobic001G134300--Sobic010G065300 Sobic001G306900 Sobic001G306900 Sobic001G134300--Sobic001G306900 Sobic010G001100 Sobic010G001100 Sobic001G134300--Sobic010G001100 Sobic001G134300--Sobic004G156500 Sobic004G086200 Sobic004G086200 Sobic001G134300--Sobic004G086200 Sobic001G398800 Sobic001G398800 Sobic001G134300--Sobic001G398800 Sobic001G090800 Sobic001G090800 Sobic001G134300--Sobic001G090800 Sobic001G346900 Sobic001G346900 Sobic001G134300--Sobic001G346900 Sobic002G153700 Sobic002G153700 Sobic001G134300--Sobic002G153700 Sobic009G129600--Sobic008G058800 Sobic009G129600--Sobic010G077500 Sobic001G346700 Sobic001G346700 Sobic009G129600--Sobic001G346700 Sobic006G248500 Sobic006G248500 Sobic009G129600--Sobic006G248500 Sobic009G040800 Sobic009G040800 Sobic009G129600--Sobic009G040800 Sobic009G129600--Sobic002G063900 Sobic008G100100 Sobic008G100100 Sobic009G129600--Sobic008G100100 Sobic002G357100 Sobic002G357100 Sobic009G129600--Sobic002G357100 Sobic002G148400 Sobic002G148400 Sobic009G129600--Sobic002G148400 Sobic001G042200 Sobic001G042200 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic010G077500--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic010G077500--Sobic007G056500 Sobic010G077500--Sobic002G063900 Sobic010G077500--Sobic009G129600 Sobic008G173100 Sobic008G173100 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic007G044100--Sobic003G427100 Sobic007G044100--Sobic004G285000 Sobic007G044100--Sobic004G111000 Sobic007G044100--Sobic001G090800 Sobic003G307000 Sobic003G307000 Sobic007G044100--Sobic003G307000 Sobic007G044100--Sobic001G134300 Sobic007G044100--Sobic003G409200 Sobic010G279900 Sobic010G279900 Sobic007G044100--Sobic010G279900 Sobic007G044100--Sobic002G234600 Sobic003G214600 Sobic003G214600 Sobic005G200800--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic002G029100 Sobic002G029100 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic009G255600 Sobic009G255600 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic005G200800--Sobic003G416700 Sobic008G058800--Sobic001G042200 Sobic008G058800--Sobic009G129600 Sobic008G058800--Sobic006G248500 Sobic003G205501 Sobic003G205501 Sobic008G058800--Sobic003G205501 Sobic008G058800--Sobic010G077500 Sobic002G264200 Sobic002G264200 Sobic008G058800--Sobic002G264200 Sobic007G026000 Sobic007G026000 Sobic008G058800--Sobic007G026000 Sobic008G127400 Sobic008G127400 Sobic008G058800--Sobic008G127400 Sobic004G180900 Sobic004G180900 Sobic008G058800--Sobic004G180900
Octagon: transcription factors


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