Gene annotation
Transcriptome id Sobic.010G215900.1
Synonym
Functional annotation type II intron maturase protein, putative, expressed
UniProt A0A194YKL6 , A0A0G3XSD3 , Q09EL4
Pfam PF01348
Panther DB PTHR33642 PTHR33642:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006397; mRNA processing


Orthologs (automatic annotation)
TAIR AT5G04050 : RNA-directed DNA polymerase (reverse transcriptase)
RAP-DB (Rice) LOC_Os06g44880.1 : type II intron maturase protein, putative, expressed
MaizeGDB (Corn) Zm00025a041999
Brachypodium KQK16914
Barley HORVU7Hr1G110850.12 , HORVU7Hr1G110850.13 , HORVU7Hr1G110850.10 , HORVU7Hr1G110850.11 , HORVU7Hr1G110850.9 , HORVU7Hr1G110850.1 , HORVU7Hr1G110850.2 , HORVU7Hr1G110850.3 , HORVU7Hr1G110850.4 , HORVU7Hr1G110850.5 , HORVU7Hr1G110850.7
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
2 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
3 Sobic.004G111000 bromodomain containing protein, expressed -
4 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
5 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
6 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
7 Sobic.008G147200 tubulin, putative, expressed -
8 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
9 Sobic.004G155600 dnaJ domain containing protein, expressed -
10 Sobic.002G105101 - -
11 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
12 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
13 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
14 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
15 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
16 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
17 Sobic.007G044100 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
18 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
19 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
20 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -


Gene co-expression network
sample Sobic010G215900 Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic010G215900--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic010G215900--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic010G215900--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic010G215900--Sobic001G346900 Sobic001G013300 Sobic001G013300 Sobic010G215900--Sobic001G013300 Sobic006G226300 Sobic006G226300 Sobic010G215900--Sobic006G226300 Sobic008G147200 Sobic008G147200 Sobic010G215900--Sobic008G147200 Sobic003G042400 Sobic003G042400 Sobic010G215900--Sobic003G042400 Sobic004G155600 Sobic004G155600 Sobic010G215900--Sobic004G155600 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic003G409200--Sobic004G111000 Sobic008G057000 Sobic008G057000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic010G279900 Sobic010G279900 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G285000--Sobic004G111000 Sobic004G285000--Sobic001G346900 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic004G285000--Sobic001G013300 Sobic004G111000--Sobic004G285000 Sobic004G111000--Sobic003G409200 Sobic004G111000--Sobic010G215900 Sobic004G111000--Sobic007G044100 Sobic004G111000--Sobic010G279900 Sobic004G043750 Sobic004G043750 Sobic004G111000--Sobic004G043750 Sobic006G056000 Sobic006G056000 Sobic004G111000--Sobic006G056000 Sobic004G111000--Sobic004G086200 Sobic002G263700 Sobic002G263700 Sobic004G111000--Sobic002G263700 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic001G013300--Sobic004G285000 Sobic001G373000 Sobic001G373000 Sobic001G013300--Sobic001G373000 Sobic001G013300--Sobic008G147200 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic006G226300--Sobic003G042400 Sobic006G226300--Sobic004G285000 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic003G258900 Sobic003G258900 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic006G014100 Sobic006G014100 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic002G425500 Sobic002G425500 Sobic004G155600--Sobic002G425500 Sobic006G118700 Sobic006G118700 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic004G155600--Sobic002G145800 Sobic001G002600 Sobic001G002600 Sobic004G155600--Sobic001G002600
Octagon: transcription factors


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