Gene annotation
Transcriptome id Sobic.008G057000.1,Sobic.008G057000.2
Synonym Sb08g004790, CHB4, ATSWI3C, SWI3C
Functional annotation SWIRM domain containing protein, expressed
UniProt C5YST2 , A0A1Z5R632
Pfam PF16495 PF00249 PF04433 PF00249 PF04433 PF16495
Panther DB PTHR12802 PTHR12802:SF41
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G21700 : SWITCH/sucrose nonfermenting 3C
RAP-DB (Rice) LOC_Os11g08080.1 : SWIRM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025712
Brachypodium KQJ92018 , KQJ92019
Barley HORVU5Hr1G037060.9 , HORVU5Hr1G037060.8 , HORVU5Hr1G037060.3 , HORVU5Hr1G037060.2 , HORVU5Hr1G037060.1 , HORVU5Hr1G037060.7 , HORVU5Hr1G037060.6 , HORVU5Hr1G037060.5 , HORVU5Hr1G037060.4 , HORVU4Hr1G017950.27 , HORVU4Hr1G017950.26 , HORVU4Hr1G017950.25 , HORVU4Hr1G017950.24 , HORVU4Hr1G017950.23 , HORVU4Hr1G017950.22 , HORVU4Hr1G017950.21 , HORVU4Hr1G017950.20 , HORVU4Hr1G017950.28 , HORVU4Hr1G017950.18 , HORVU4Hr1G017950.19 , HORVU4Hr1G017950.16 , HORVU4Hr1G017950.17 , HORVU4Hr1G017950.14 , HORVU4Hr1G017950.15 , HORVU4Hr1G017950.12 , HORVU4Hr1G017950.13 , HORVU4Hr1G017950.10 , HORVU4Hr1G017950.11 , HORVU4Hr1G017950.8 , HORVU4Hr1G017950.9 , HORVU4Hr1G017950.4 , HORVU4Hr1G017950.5 , HORVU4Hr1G017950.6 , HORVU4Hr1G017950.7 , HORVU4Hr1G017950.1 , HORVU4Hr1G017950.2 , HORVU4Hr1G017950.3
Wheat TraesCS5B02G119800 , TraesCS5A02G113500 , TraesCS5A02G113500 , TraesCS5B02G119800 , TraesCS5D02G128700 , TraesCS4B02G097500 , TraesCS4D02G093900 , TraesCS4D02G093900
Populus -


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cDNA sequences
Sobic.008G057000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
2 Sobic.005G200800 homeobox domain containing protein, expressed -
3 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
4 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
5 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
6 Sobic.010G279900 PHD-finger domain containing protein, expressed -
7 Sobic.001G484200 "RGA1/D1(Ortholog in rice:Ashikari, 1999)"(PubMedID : 31659848)@G-protein alpha subunit, putative, expressed K04640: guanine nucleotide-binding protein subunit alpha, other
8 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
9 Sobic.007G183300 expressed protein -
10 Sobic.008G164700 - -
11 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
12 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
13 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
14 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.001G245900 expressed protein -
16 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
17 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
18 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
19 Sobic.002G029100 GYF domain containing protein, putative, expressed -
20 Sobic.005G047300 OsFBT13 - F-box and tubby domain containing protein, expressed -


Gene co-expression network
sample Sobic008G057000 Sobic008G057000 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic001G346900 Sobic001G346900 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic003G409200--Sobic001G346900 Sobic010G215900 Sobic010G215900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic003G409200--Sobic008G057000 Sobic003G427100 Sobic003G427100 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic004G285000 Sobic004G285000 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic002G145800 Sobic002G145800 Sobic003G409200--Sobic002G145800 Sobic003G214600 Sobic003G214600 Sobic005G200800--Sobic003G214600 Sobic005G200800--Sobic007G183300 Sobic007G168300 Sobic007G168300 Sobic005G200800--Sobic007G168300 Sobic002G029100 Sobic002G029100 Sobic005G200800--Sobic002G029100 Sobic002G154000 Sobic002G154000 Sobic005G200800--Sobic002G154000 Sobic001G461400 Sobic001G461400 Sobic005G200800--Sobic001G461400 Sobic009G255600 Sobic009G255600 Sobic005G200800--Sobic009G255600 Sobic001G063700 Sobic001G063700 Sobic005G200800--Sobic001G063700 Sobic003G416700 Sobic003G416700 Sobic005G200800--Sobic003G416700 Sobic001G346900--Sobic004G086200 Sobic001G346900--Sobic003G409200 Sobic001G134300 Sobic001G134300 Sobic001G346900--Sobic001G134300 Sobic003G042400 Sobic003G042400 Sobic001G346900--Sobic003G042400 Sobic008G147200 Sobic008G147200 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic001G346900--Sobic003G416700 Sobic010G096000 Sobic010G096000 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic004G086200--Sobic001G346900 Sobic004G086200--Sobic004G285000 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic001G306900 Sobic001G306900 Sobic004G086200--Sobic001G306900 Sobic004G086200--Sobic010G096000 Sobic004G086200--Sobic010G279900 Sobic001G246500 Sobic001G246500 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic004G049700 Sobic004G049700 Sobic002G148400--Sobic004G049700 Sobic009G129600 Sobic009G129600 Sobic002G148400--Sobic009G129600 Sobic002G148400--Sobic008G057000 Sobic002G148400--Sobic001G484200 Sobic002G148400--Sobic001G134300 Sobic004G156500 Sobic004G156500 Sobic002G148400--Sobic004G156500 Sobic002G357100 Sobic002G357100 Sobic002G148400--Sobic002G357100 Sobic002G148400--Sobic004G086200 Sobic001G346700 Sobic001G346700 Sobic002G148400--Sobic001G346700 Sobic010G279900--Sobic004G156500 Sobic010G279900--Sobic007G183300 Sobic010G279900--Sobic004G086200 Sobic001G367100 Sobic001G367100 Sobic010G279900--Sobic001G367100 Sobic007G027700 Sobic007G027700 Sobic010G279900--Sobic007G027700 Sobic010G279900--Sobic003G409200 Sobic003G253400 Sobic003G253400 Sobic010G279900--Sobic003G253400 Sobic010G279900--Sobic003G416700 Sobic008G100100 Sobic008G100100 Sobic010G279900--Sobic008G100100 Sobic001G484200--Sobic002G148400 Sobic001G484200--Sobic008G057000 Sobic010G233000 Sobic010G233000 Sobic001G484200--Sobic010G233000 Sobic001G373000 Sobic001G373000 Sobic001G484200--Sobic001G373000 Sobic001G484200--Sobic001G346900 Sobic004G043750 Sobic004G043750 Sobic001G484200--Sobic004G043750 Sobic001G484200--Sobic003G409200 Sobic001G013300 Sobic001G013300 Sobic001G484200--Sobic001G013300 Sobic009G235200 Sobic009G235200 Sobic001G484200--Sobic009G235200 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic009G032200--Sobic004G043750 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic007G183300--Sobic003G214600 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700
Octagon: transcription factors


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