Gene annotation
Transcriptome id Sobic.005G046900.2,Sobic.005G046900.1
Synonym Sb05g003870
Functional annotation expressed protein
UniProt C5Y565
Pfam PF10033
Panther DB PTHR13430
NCBI CDD KOG4573; Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy
KEGG Orthology K08331; autophagy-related protein 13
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18770 : Autophagy-related protein 13
RAP-DB (Rice) LOC_Os11g06320.1 : expressed protein
MaizeGDB (Corn) Zm00025a034166 , Zm00025a012922
Brachypodium -
Barley HORVU4Hr1G020190.6 , HORVU4Hr1G020190.4 , HORVU4Hr1G020190.5 , HORVU4Hr1G020190.2 , HORVU4Hr1G020190.3 , HORVU4Hr1G020190.1
Wheat TraesCS4B02G112800 , TraesCS4B02G112800 , TraesCS4D02G110500 , TraesCS4D02G110500 , TraesCS4A02G209500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G276000 CAMK_CAMK_like_ULKh_APGy.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
2 Sobic.007G041300 expressed protein -
3 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
4 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
5 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
6 Sobic.006G120800 transglutaminase, putative, expressed -
7 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
8 Sobic.005G191700 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
9 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
10 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
11 Sobic.003G253400 expressed protein -
12 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
13 Sobic.007G183300 expressed protein -
14 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
15 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
16 Sobic.010G235800 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
17 Sobic.010G186600 expressed protein -
18 Sobic.007G102700 - -
19 Sobic.005G025800 dual specificity protein phosphatase, putative, expressed K14819: DUSP12, dual specificity phosphatase 12
20 Sobic.001G023800 expressed protein -


Gene co-expression network
sample Sobic005G046900 Sobic005G046900 Sobic006G276000 Sobic006G276000 Sobic005G046900--Sobic006G276000 Sobic007G041300 Sobic007G041300 Sobic005G046900--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic005G046900--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic005G046900--Sobic003G427100 Sobic001G013300 Sobic001G013300 Sobic005G046900--Sobic001G013300 Sobic006G120800 Sobic006G120800 Sobic005G046900--Sobic006G120800 Sobic008G057000 Sobic008G057000 Sobic005G046900--Sobic008G057000 Sobic005G191700 Sobic005G191700 Sobic005G046900--Sobic005G191700 Sobic003G409200 Sobic003G409200 Sobic005G046900--Sobic003G409200 Sobic006G276000--Sobic005G046900 Sobic002G262700 Sobic002G262700 Sobic006G276000--Sobic002G262700 Sobic002G389800 Sobic002G389800 Sobic006G276000--Sobic002G389800 Sobic007G191700 Sobic007G191700 Sobic006G276000--Sobic007G191700 Sobic006G278200 Sobic006G278200 Sobic006G276000--Sobic006G278200 Sobic006G276000--Sobic007G041300 Sobic006G248500 Sobic006G248500 Sobic006G276000--Sobic006G248500 Sobic003G253400 Sobic003G253400 Sobic006G276000--Sobic003G253400 Sobic002G095700 Sobic002G095700 Sobic006G276000--Sobic002G095700 Sobic007G102700 Sobic007G102700 Sobic007G041300--Sobic007G102700 Sobic001G473600 Sobic001G473600 Sobic007G041300--Sobic001G473600 Sobic007G041300--Sobic007G191700 Sobic004G036300 Sobic004G036300 Sobic007G041300--Sobic004G036300 Sobic009G137700 Sobic009G137700 Sobic007G041300--Sobic009G137700 Sobic003G438900 Sobic003G438900 Sobic007G041300--Sobic003G438900 Sobic004G088200 Sobic004G088200 Sobic007G041300--Sobic004G088200 Sobic007G041300--Sobic005G079800 Sobic007G041300--Sobic003G427100 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic005G079800--Sobic007G191700 Sobic002G153700 Sobic002G153700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G427100--Sobic003G438900 Sobic003G307000 Sobic003G307000 Sobic003G427100--Sobic003G307000 Sobic001G013300--Sobic004G285000 Sobic001G373000 Sobic001G373000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic001G038100 Sobic001G038100 Sobic006G120800--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic006G120800--Sobic007G117100 Sobic009G258400 Sobic009G258400 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic007G183300 Sobic007G183300 Sobic008G057000--Sobic007G183300 Sobic006G269800 Sobic006G269800 Sobic005G191700--Sobic006G269800 Sobic005G191700--Sobic005G046900 Sobic002G145800 Sobic002G145800 Sobic005G191700--Sobic002G145800 Sobic005G191700--Sobic001G013300 Sobic005G191700--Sobic003G409200 Sobic005G191700--Sobic008G057000 Sobic003G062300 Sobic003G062300 Sobic005G191700--Sobic003G062300 Sobic001G373400 Sobic001G373400 Sobic005G191700--Sobic001G373400 Sobic002G029100 Sobic002G029100 Sobic005G191700--Sobic002G029100 Sobic003G409200--Sobic001G346900 Sobic003G409200--Sobic010G215900 Sobic004G111000 Sobic004G111000 Sobic003G409200--Sobic004G111000 Sobic003G409200--Sobic008G057000 Sobic003G409200--Sobic003G427100 Sobic001G501800 Sobic001G501800 Sobic003G409200--Sobic001G501800 Sobic003G409200--Sobic004G285000 Sobic003G409200--Sobic010G279900 Sobic003G409200--Sobic002G145800
Octagon: transcription factors


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