Gene annotation
Transcriptome id Sobic.001G230500.1
Synonym Sb01g020190, emb2444
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WZH3
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF449
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology K12831; SF3B4, splicing factor 3B subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G18510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os10g31900.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017692 , Zm00025a006724
Brachypodium KQJ96953 , PNT67487
Barley HORVU1Hr1G038240.6 , HORVU1Hr1G038240.4 , HORVU1Hr1G038240.5 , HORVU1Hr1G038240.2 , HORVU1Hr1G038240.3 , HORVU1Hr1G038240.1
Wheat TraesCS1B02G160900 , TraesCS1A02G143500 , TraesCS1D02G142300
Populus -


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cDNA sequences
Sobic.001G230500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
2 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
3 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
4 Sobic.009G195200 ESP1, putative, expressed -
5 Sobic.006G120800 transglutaminase, putative, expressed -
6 Sobic.005G072400 expressed protein -
7 Sobic.003G427100 WD domain, G-beta repeat domain containing protein, expressed K15542: polyadenylation factor subunit 2
8 Sobic.007G187600 pentatricopeptide, putative, expressed -
9 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
11 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
12 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
13 Sobic.007G041300 expressed protein -
14 Sobic.001G023800 expressed protein -
15 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
16 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
17 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
18 Sobic.009G126800 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
19 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
20 Sobic.005G187400 A49-like RNA polymerase I associated factor family protein, expressed K03005: RPA49, DNA-directed RNA polymerase I subunit RPA49


Gene co-expression network
sample Sobic001G230500 Sobic001G230500 Sobic003G433500 Sobic003G433500 Sobic001G230500--Sobic003G433500 Sobic001G168900 Sobic001G168900 Sobic001G230500--Sobic001G168900 Sobic005G046900 Sobic005G046900 Sobic001G230500--Sobic005G046900 Sobic009G195200 Sobic009G195200 Sobic001G230500--Sobic009G195200 Sobic006G120800 Sobic006G120800 Sobic001G230500--Sobic006G120800 Sobic005G072400 Sobic005G072400 Sobic001G230500--Sobic005G072400 Sobic003G427100 Sobic003G427100 Sobic001G230500--Sobic003G427100 Sobic007G187600 Sobic007G187600 Sobic001G230500--Sobic007G187600 Sobic001G038100 Sobic001G038100 Sobic001G230500--Sobic001G038100 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic002G077900 Sobic002G077900 Sobic001G168900--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic006G276000 Sobic006G276000 Sobic005G046900--Sobic006G276000 Sobic007G041300 Sobic007G041300 Sobic005G046900--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic005G046900--Sobic005G079800 Sobic005G046900--Sobic003G427100 Sobic001G013300 Sobic001G013300 Sobic005G046900--Sobic001G013300 Sobic005G046900--Sobic006G120800 Sobic008G057000 Sobic008G057000 Sobic005G046900--Sobic008G057000 Sobic005G191700 Sobic005G191700 Sobic005G046900--Sobic005G191700 Sobic003G409200 Sobic003G409200 Sobic005G046900--Sobic003G409200 Sobic009G195200--Sobic002G259800 Sobic009G195200--Sobic003G433500 Sobic009G195200--Sobic006G267300 Sobic002G264200 Sobic002G264200 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic009G195200--Sobic003G355000 Sobic007G091600 Sobic007G091600 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic006G120800--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic001G507400 Sobic001G507400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic006G278200 Sobic006G278200 Sobic005G072400--Sobic006G278200 Sobic002G253600 Sobic002G253600 Sobic005G072400--Sobic002G253600 Sobic005G198200 Sobic005G198200 Sobic005G072400--Sobic005G198200 Sobic003G343600 Sobic003G343600 Sobic005G072400--Sobic003G343600 Sobic009G137900 Sobic009G137900 Sobic005G072400--Sobic009G137900 Sobic005G072400--Sobic001G230500 Sobic003G415100 Sobic003G415100 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic005G072400--Sobic006G261100 Sobic003G427100--Sobic005G079800 Sobic007G044100 Sobic007G044100 Sobic003G427100--Sobic007G044100 Sobic003G427100--Sobic003G409200 Sobic004G285000 Sobic004G285000 Sobic003G427100--Sobic004G285000 Sobic001G398800 Sobic001G398800 Sobic003G427100--Sobic001G398800 Sobic002G153700 Sobic002G153700 Sobic003G427100--Sobic002G153700 Sobic004G156500 Sobic004G156500 Sobic003G427100--Sobic004G156500 Sobic003G438900 Sobic003G438900 Sobic003G427100--Sobic003G438900 Sobic003G307000 Sobic003G307000 Sobic003G427100--Sobic003G307000 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic003G420700 Sobic003G420700 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400
Octagon: transcription factors


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