Gene annotation
Transcriptome id Sobic.005G072400.1,Sobic.005G072400.2
Synonym
Functional annotation expressed protein
UniProt C5Y6R9 , A0A1Z5RH67
Pfam PF03171
Panther DB PTHR10209 PTHR10209:SF170
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G63290 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os10g14180.4,LOC_Os10g14180.8 : expressed protein
MaizeGDB (Corn) Zm00025a034136
Brachypodium KQK07997
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G072400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
2 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
4 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
6 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
7 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
8 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
9 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
10 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
12 Sobic.010G189100 expressed protein -
13 Sobic.004G036300 marker Xucw84, putative, expressed -
14 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
15 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
16 Sobic.009G126800 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
17 Sobic.003G051700 universal stress protein domain containing protein, putative, expressed -
18 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
19 Sobic.002G067800 - -
20 Sobic.009G257500 expressed protein -


Gene co-expression network
sample Sobic005G072400 Sobic005G072400 Sobic006G278200 Sobic006G278200 Sobic005G072400--Sobic006G278200 Sobic002G253600 Sobic002G253600 Sobic005G072400--Sobic002G253600 Sobic005G198200 Sobic005G198200 Sobic005G072400--Sobic005G198200 Sobic003G343600 Sobic003G343600 Sobic005G072400--Sobic003G343600 Sobic009G137900 Sobic009G137900 Sobic005G072400--Sobic009G137900 Sobic001G230500 Sobic001G230500 Sobic005G072400--Sobic001G230500 Sobic003G415100 Sobic003G415100 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100 Sobic002G095700 Sobic002G095700 Sobic006G278200--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic006G278200--Sobic008G073000 Sobic006G278200--Sobic005G072400 Sobic005G030300 Sobic005G030300 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic006G278200--Sobic009G137900 Sobic002G089900 Sobic002G089900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic002G253600--Sobic005G072400 Sobic002G016900 Sobic002G016900 Sobic002G253600--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic006G203200 Sobic006G203200 Sobic002G253600--Sobic006G203200 Sobic008G156200 Sobic008G156200 Sobic002G253600--Sobic008G156200 Sobic002G253600--Sobic006G278200 Sobic003G022200 Sobic003G022200 Sobic002G253600--Sobic003G022200 Sobic002G253600--Sobic003G415100 Sobic009G059400 Sobic009G059400 Sobic005G198200--Sobic009G059400 Sobic009G113100 Sobic009G113100 Sobic005G198200--Sobic009G113100 Sobic005G198200--Sobic009G137900 Sobic005G198200--Sobic005G072400 Sobic009G017200 Sobic009G017200 Sobic005G198200--Sobic009G017200 Sobic001G472100 Sobic001G472100 Sobic005G198200--Sobic001G472100 Sobic008G111800 Sobic008G111800 Sobic005G198200--Sobic008G111800 Sobic004G180900 Sobic004G180900 Sobic005G198200--Sobic004G180900 Sobic010G077500 Sobic010G077500 Sobic005G198200--Sobic010G077500 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic002G223300 Sobic002G223300 Sobic003G343600--Sobic002G223300 Sobic003G343600--Sobic005G072400 Sobic006G248500 Sobic006G248500 Sobic003G343600--Sobic006G248500 Sobic004G285000 Sobic004G285000 Sobic003G343600--Sobic004G285000 Sobic002G268900 Sobic002G268900 Sobic003G343600--Sobic002G268900 Sobic003G343600--Sobic005G198200 Sobic003G343600--Sobic006G278200 Sobic004G085300 Sobic004G085300 Sobic003G343600--Sobic004G085300 Sobic009G137900--Sobic009G017200 Sobic009G137900--Sobic005G198200 Sobic003G051700 Sobic003G051700 Sobic009G137900--Sobic003G051700 Sobic009G137900--Sobic006G278200 Sobic009G137900--Sobic004G180900 Sobic009G137900--Sobic008G111800 Sobic001G426900 Sobic001G426900 Sobic009G137900--Sobic001G426900 Sobic009G137900--Sobic005G072400 Sobic009G137900--Sobic003G343600 Sobic003G433500 Sobic003G433500 Sobic001G230500--Sobic003G433500 Sobic001G168900 Sobic001G168900 Sobic001G230500--Sobic001G168900 Sobic005G046900 Sobic005G046900 Sobic001G230500--Sobic005G046900 Sobic009G195200 Sobic009G195200 Sobic001G230500--Sobic009G195200 Sobic006G120800 Sobic006G120800 Sobic001G230500--Sobic006G120800 Sobic001G230500--Sobic005G072400 Sobic003G427100 Sobic003G427100 Sobic001G230500--Sobic003G427100 Sobic007G187600 Sobic007G187600 Sobic001G230500--Sobic007G187600 Sobic001G038100 Sobic001G038100 Sobic001G230500--Sobic001G038100 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic002G390400 Sobic002G390400 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic007G043500 Sobic007G043500 Sobic002G159200--Sobic007G043500 Sobic009G000500 Sobic009G000500 Sobic002G159200--Sobic009G000500 Sobic002G159200--Sobic002G067800 Sobic003G307000 Sobic003G307000 Sobic002G159200--Sobic003G307000 Sobic005G059100 Sobic005G059100 Sobic002G159200--Sobic005G059100 Sobic001G405300 Sobic001G405300 Sobic002G159200--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic002G159200--Sobic006G046700 Sobic003G355000 Sobic003G355000 Sobic002G159200--Sobic003G355000 Sobic007G026000 Sobic007G026000 Sobic002G159200--Sobic007G026000 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100
Octagon: transcription factors


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