Gene annotation
Transcriptome id Sobic.002G253600.1,Sobic.002G253600.3,Sobic.002G253600.2
Synonym
Functional annotation KH domain-containing protein, putative, expressed
UniProt A0A1B6QDG2 , A0A1W0W5V7 , A0A1B6QDG7
Pfam PF13014 PF00013 PF00013
Panther DB PTHR10288 PTHR10288:SF173
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G64390 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os09g32300.1 : KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014263
Brachypodium KQJ90866 , PNT64876
Barley HORVU5Hr1G075110.5 , HORVU5Hr1G075110.4 , HORVU5Hr1G075110.7 , HORVU5Hr1G075110.6 , HORVU5Hr1G075110.3 , HORVU5Hr1G075110.2 , HORVU5Hr1G075110.9 , HORVU5Hr1G075110.8
Wheat TraesCS5A02G276800 , TraesCS5A02G276800 , TraesCS5A02G276800 , TraesCS5A02G276800 , TraesCS5A02G276800 , TraesCS5B02G276400 , TraesCS5B02G276400 , TraesCS5B02G276400 , TraesCS5B02G276400 , TraesCS5D02G284200 , TraesCS5D02G284200 , TraesCS5D02G284200 , TraesCS5D02G284200
Populus -


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cDNA sequences
Sobic.002G253600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G072400 expressed protein -
2 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
3 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.009G126800 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
5 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
6 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
7 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
8 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
9 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
10 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
11 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
12 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
13 Sobic.009G137900 OsFBL9 - F-box domain and LRR containing protein, expressed -
14 Sobic.002G067800 - -
15 Sobic.002G362300 prefoldin, putative, expressed -
16 Sobic.009G257500 expressed protein -
17 Sobic.002G059866 - -
18 Sobic.001G230500 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
19 Sobic.008G073000 expressed protein -
20 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1


Gene co-expression network
sample Sobic002G253600 Sobic002G253600 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G016900 Sobic002G016900 Sobic002G253600--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic006G203200 Sobic006G203200 Sobic002G253600--Sobic006G203200 Sobic008G156200 Sobic008G156200 Sobic002G253600--Sobic008G156200 Sobic006G278200 Sobic006G278200 Sobic002G253600--Sobic006G278200 Sobic003G022200 Sobic003G022200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic005G072400--Sobic006G278200 Sobic005G072400--Sobic002G253600 Sobic005G198200 Sobic005G198200 Sobic005G072400--Sobic005G198200 Sobic003G343600 Sobic003G343600 Sobic005G072400--Sobic003G343600 Sobic009G137900 Sobic009G137900 Sobic005G072400--Sobic009G137900 Sobic001G230500 Sobic001G230500 Sobic005G072400--Sobic001G230500 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic002G016900--Sobic006G203200 Sobic002G016900--Sobic002G253600 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic003G244700--Sobic006G203200 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic009G126800--Sobic002G253600 Sobic009G126800--Sobic002G362300 Sobic002G408600 Sobic002G408600 Sobic009G126800--Sobic002G408600 Sobic008G165100 Sobic008G165100 Sobic009G126800--Sobic008G165100 Sobic003G433500 Sobic003G433500 Sobic009G126800--Sobic003G433500 Sobic005G009200 Sobic005G009200 Sobic009G126800--Sobic005G009200 Sobic010G202600 Sobic010G202600 Sobic009G126800--Sobic010G202600 Sobic009G126800--Sobic001G230500 Sobic010G235800 Sobic010G235800 Sobic009G126800--Sobic010G235800 Sobic006G203200--Sobic002G016900 Sobic006G203200--Sobic003G244700 Sobic006G203200--Sobic002G253600 Sobic006G120400 Sobic006G120400 Sobic006G203200--Sobic006G120400 Sobic002G341100 Sobic002G341100 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic006G203200--Sobic008G156200 Sobic009G242800 Sobic009G242800 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic010G207400 Sobic010G207400 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic008G156200--Sobic003G035500 Sobic004G075700 Sobic004G075700 Sobic008G156200--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic010G112700 Sobic010G112700 Sobic008G156200--Sobic010G112700 Sobic008G156200--Sobic002G016900 Sobic004G038900 Sobic004G038900 Sobic008G156200--Sobic004G038900 Sobic002G095700 Sobic002G095700 Sobic006G278200--Sobic002G095700 Sobic008G073000 Sobic008G073000 Sobic006G278200--Sobic008G073000 Sobic006G278200--Sobic005G072400 Sobic005G030300 Sobic005G030300 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic006G278200--Sobic002G341100 Sobic006G278200--Sobic009G137900 Sobic002G089900 Sobic002G089900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic010G189100 Sobic010G189100 Sobic003G022200--Sobic010G189100 Sobic003G022200--Sobic001G130700 Sobic007G078300 Sobic007G078300 Sobic003G022200--Sobic007G078300 Sobic003G022200--Sobic003G035500 Sobic001G041400 Sobic001G041400 Sobic003G022200--Sobic001G041400 Sobic003G022200--Sobic002G253600 Sobic003G022200--Sobic002G016900 Sobic003G022200--Sobic006G278200 Sobic001G033400 Sobic001G033400 Sobic003G022200--Sobic001G033400 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic002G390400 Sobic002G390400 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400
Octagon: transcription factors


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