Gene annotation
Transcriptome id Sobic.002G059866.1
Synonym -
Functional annotation -
UniProt A0A1W0W2L7
Pfam PF12937
Panther DB PTHR32133 PTHR32133:SF142
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G40925 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g35060.1 : OsFBX238 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
2 Sobic.010G270800 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
4 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
6 Sobic.002G019600 OsFBX234 - F-box domain containing protein, expressed -
7 Sobic.010G262900 expressed protein -
8 Sobic.003G174200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
10 Sobic.005G072400 expressed protein -
11 Sobic.007G078300 serine/threonine-protein kinase HT1, putative, expressed -
12 Sobic.003G035500 hexokinase, putative, expressed K00844: hexokinase
13 Sobic.002G103700 - -
14 Sobic.004G207100 expressed protein -
15 Sobic.010G207400 protein kinase domain containing protein, expressed -
16 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
18 Sobic.010G189100 expressed protein -
19 Sobic.007G095700 Brix domain containing protein, putative, expressed -
20 Sobic.002G019500 OsFBX234 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G059866 Sobic002G059866 Sobic002G016900 Sobic002G016900 Sobic002G059866--Sobic002G016900 Sobic010G270800 Sobic010G270800 Sobic002G059866--Sobic010G270800 Sobic003G022200 Sobic003G022200 Sobic002G059866--Sobic003G022200 Sobic002G253600 Sobic002G253600 Sobic002G059866--Sobic002G253600 Sobic003G244700 Sobic003G244700 Sobic002G059866--Sobic003G244700 Sobic002G019600 Sobic002G019600 Sobic002G059866--Sobic002G019600 Sobic010G262900 Sobic010G262900 Sobic002G059866--Sobic010G262900 Sobic003G174200 Sobic003G174200 Sobic002G059866--Sobic003G174200 Sobic008G156200 Sobic008G156200 Sobic002G059866--Sobic008G156200 Sobic002G016900--Sobic002G059866 Sobic006G203200 Sobic006G203200 Sobic002G016900--Sobic006G203200 Sobic002G016900--Sobic002G253600 Sobic002G016900--Sobic008G156200 Sobic002G016900--Sobic003G174200 Sobic002G016900--Sobic010G270800 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic010G270800--Sobic002G016900 Sobic010G270800--Sobic002G059866 Sobic010G270800--Sobic003G022200 Sobic007G078300 Sobic007G078300 Sobic010G270800--Sobic007G078300 Sobic007G209000 Sobic007G209000 Sobic010G270800--Sobic007G209000 Sobic010G270800--Sobic002G253600 Sobic001G130700 Sobic001G130700 Sobic010G270800--Sobic001G130700 Sobic009G090100 Sobic009G090100 Sobic010G270800--Sobic009G090100 Sobic004G038900 Sobic004G038900 Sobic010G270800--Sobic004G038900 Sobic010G189100 Sobic010G189100 Sobic003G022200--Sobic010G189100 Sobic003G022200--Sobic001G130700 Sobic003G022200--Sobic007G078300 Sobic003G022200--Sobic003G035500 Sobic001G041400 Sobic001G041400 Sobic003G022200--Sobic001G041400 Sobic003G022200--Sobic002G253600 Sobic003G022200--Sobic002G016900 Sobic006G278200 Sobic006G278200 Sobic003G022200--Sobic006G278200 Sobic001G033400 Sobic001G033400 Sobic003G022200--Sobic001G033400 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G253600--Sobic002G016900 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic002G253600--Sobic006G203200 Sobic002G253600--Sobic008G156200 Sobic002G253600--Sobic006G278200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic003G244700--Sobic006G203200 Sobic003G244700--Sobic002G253600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic004G005400 Sobic004G005400 Sobic002G019600--Sobic004G005400 Sobic002G019600--Sobic003G244700 Sobic002G062300 Sobic002G062300 Sobic002G019600--Sobic002G062300 Sobic001G261480 Sobic001G261480 Sobic002G019600--Sobic001G261480 Sobic005G139800 Sobic005G139800 Sobic002G019600--Sobic005G139800 Sobic003G031750 Sobic003G031750 Sobic002G019600--Sobic003G031750 Sobic005G117801 Sobic005G117801 Sobic002G019600--Sobic005G117801 Sobic009G209800 Sobic009G209800 Sobic002G019600--Sobic009G209800 Sobic008G079100 Sobic008G079100 Sobic002G019600--Sobic008G079100 Sobic010G262900--Sobic003G035500 Sobic008G045800 Sobic008G045800 Sobic010G262900--Sobic008G045800 Sobic010G262900--Sobic003G415100 Sobic009G257500 Sobic009G257500 Sobic010G262900--Sobic009G257500 Sobic005G032400 Sobic005G032400 Sobic010G262900--Sobic005G032400 Sobic010G262900--Sobic008G156200 Sobic010G262900--Sobic010G189100 Sobic003G004500 Sobic003G004500 Sobic010G262900--Sobic003G004500 Sobic010G262900--Sobic001G033400 Sobic003G230500 Sobic003G230500 Sobic003G174200--Sobic003G230500 Sobic001G037800 Sobic001G037800 Sobic003G174200--Sobic001G037800 Sobic007G034900 Sobic007G034900 Sobic003G174200--Sobic007G034900 Sobic004G261000 Sobic004G261000 Sobic003G174200--Sobic004G261000 Sobic001G158600 Sobic001G158600 Sobic003G174200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic003G174200--Sobic006G051750 Sobic001G253400 Sobic001G253400 Sobic003G174200--Sobic001G253400 Sobic003G135000 Sobic003G135000 Sobic003G174200--Sobic003G135000 Sobic006G104800 Sobic006G104800 Sobic003G174200--Sobic006G104800 Sobic010G207400 Sobic010G207400 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic008G156200--Sobic003G035500 Sobic004G075700 Sobic004G075700 Sobic008G156200--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic010G112700 Sobic010G112700 Sobic008G156200--Sobic010G112700 Sobic008G156200--Sobic002G016900 Sobic008G156200--Sobic004G038900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.