Gene annotation
Transcriptome id Sobic.003G174200.4,Sobic.003G174200.3,Sobic.003G174200.2
Synonym Sb03g021307
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0VXQ7 , A0A1W0VXT2
Pfam -
Panther DB PTHR33157 PTHR33157:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os11g41770.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G230500 "Sh2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659869)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
2 Sobic.001G037800 cinnamoyl CoA reductase, putative, expressed -
3 Sobic.007G034900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.004G261000 expressed protein -
5 Sobic.001G158600 MYB family transcription factor, putative, expressed -
6 Sobic.006G051750 - -
7 Sobic.001G253400 AP2 domain containing protein, expressed -
8 Sobic.003G135000 major facilitator superfamily antiporter, putative, expressed -
9 Sobic.006G104800 dnaJ domain containing protein, expressed -
10 Sobic.009G116500 esterase, putative, expressed -
11 Sobic.005G193700 - -
12 Sobic.010G085700 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
13 Sobic.005G153200 - -
14 Sobic.001G259250 - -
15 Sobic.004G142000 - -
16 Sobic.005G056300 no apical meristem protein, putative, expressed -
17 Sobic.009G040000 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
18 Sobic.004G099750 - -
19 Sobic.010G200200 AP2 domain containing protein, expressed -
20 Sobic.006G080500 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G174200 Sobic003G174200 Sobic003G230500 Sobic003G230500 Sobic003G174200--Sobic003G230500 Sobic001G037800 Sobic001G037800 Sobic003G174200--Sobic001G037800 Sobic007G034900 Sobic007G034900 Sobic003G174200--Sobic007G034900 Sobic004G261000 Sobic004G261000 Sobic003G174200--Sobic004G261000 Sobic001G158600 Sobic001G158600 Sobic003G174200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic003G174200--Sobic006G051750 Sobic001G253400 Sobic001G253400 Sobic003G174200--Sobic001G253400 Sobic003G135000 Sobic003G135000 Sobic003G174200--Sobic003G135000 Sobic006G104800 Sobic006G104800 Sobic003G174200--Sobic006G104800 Sobic005G001500 Sobic005G001500 Sobic003G230500--Sobic005G001500 Sobic003G307600 Sobic003G307600 Sobic003G230500--Sobic003G307600 Sobic009G021300 Sobic009G021300 Sobic003G230500--Sobic009G021300 Sobic003G227800 Sobic003G227800 Sobic003G230500--Sobic003G227800 Sobic002G408700 Sobic002G408700 Sobic003G230500--Sobic002G408700 Sobic010G102900 Sobic010G102900 Sobic003G230500--Sobic010G102900 Sobic005G089101 Sobic005G089101 Sobic003G230500--Sobic005G089101 Sobic001G142600 Sobic001G142600 Sobic003G230500--Sobic001G142600 Sobic008G071900 Sobic008G071900 Sobic003G230500--Sobic008G071900 Sobic009G116500 Sobic009G116500 Sobic001G037800--Sobic009G116500 Sobic001G297800 Sobic001G297800 Sobic001G037800--Sobic001G297800 Sobic002G028100 Sobic002G028100 Sobic001G037800--Sobic002G028100 Sobic002G089400 Sobic002G089400 Sobic001G037800--Sobic002G089400 Sobic001G037800--Sobic007G034900 Sobic002G367600 Sobic002G367600 Sobic001G037800--Sobic002G367600 Sobic002G338600 Sobic002G338600 Sobic001G037800--Sobic002G338600 Sobic010G200200 Sobic010G200200 Sobic001G037800--Sobic010G200200 Sobic007G205100 Sobic007G205100 Sobic001G037800--Sobic007G205100 Sobic007G034900--Sobic004G261000 Sobic007G034900--Sobic009G116500 Sobic005G153200 Sobic005G153200 Sobic007G034900--Sobic005G153200 Sobic001G259250 Sobic001G259250 Sobic007G034900--Sobic001G259250 Sobic004G142000 Sobic004G142000 Sobic007G034900--Sobic004G142000 Sobic007G034900--Sobic006G051750 Sobic007G034900--Sobic001G158600 Sobic007G034900--Sobic010G200200 Sobic005G193700 Sobic005G193700 Sobic007G034900--Sobic005G193700 Sobic004G261000--Sobic006G051750 Sobic004G261000--Sobic005G153200 Sobic004G261000--Sobic001G259250 Sobic004G261000--Sobic001G158600 Sobic004G261000--Sobic007G034900 Sobic004G261000--Sobic004G142000 Sobic004G261000--Sobic009G116500 Sobic004G261000--Sobic010G200200 Sobic008G081700 Sobic008G081700 Sobic004G261000--Sobic008G081700 Sobic001G158600--Sobic001G253400 Sobic001G158600--Sobic005G193700 Sobic001G158600--Sobic006G051750 Sobic001G158600--Sobic004G261000 Sobic001G158600--Sobic003G135000 Sobic004G099750 Sobic004G099750 Sobic001G158600--Sobic004G099750 Sobic001G158600--Sobic007G034900 Sobic002G409250 Sobic002G409250 Sobic001G158600--Sobic002G409250 Sobic001G158600--Sobic005G153200 Sobic006G051750--Sobic004G261000 Sobic006G051750--Sobic005G153200 Sobic006G051750--Sobic001G259250 Sobic006G051750--Sobic001G158600 Sobic006G051750--Sobic004G142000 Sobic006G051750--Sobic001G253400 Sobic006G051750--Sobic005G193700 Sobic006G051750--Sobic004G099750 Sobic006G051750--Sobic010G200200 Sobic001G253400--Sobic001G158600 Sobic001G253400--Sobic005G193700 Sobic001G253400--Sobic006G051750 Sobic009G040000 Sobic009G040000 Sobic001G253400--Sobic009G040000 Sobic001G253400--Sobic002G409250 Sobic003G091400 Sobic003G091400 Sobic001G253400--Sobic003G091400 Sobic006G015750 Sobic006G015750 Sobic001G253400--Sobic006G015750 Sobic001G253400--Sobic004G261000 Sobic001G253400--Sobic003G135000 Sobic005G056300 Sobic005G056300 Sobic003G135000--Sobic005G056300 Sobic006G080500 Sobic006G080500 Sobic003G135000--Sobic006G080500 Sobic006G178400 Sobic006G178400 Sobic003G135000--Sobic006G178400 Sobic002G078800 Sobic002G078800 Sobic003G135000--Sobic002G078800 Sobic003G135000--Sobic001G158600 Sobic003G135000--Sobic005G193700 Sobic003G135000--Sobic001G253400 Sobic003G135000--Sobic002G409250 Sobic003G135000--Sobic003G091400 Sobic006G104800--Sobic003G135000 Sobic006G104800--Sobic006G080500 Sobic002G381600 Sobic002G381600 Sobic006G104800--Sobic002G381600 Sobic006G104800--Sobic001G142600 Sobic006G104800--Sobic005G056300 Sobic001G392900 Sobic001G392900 Sobic006G104800--Sobic001G392900 Sobic002G053100 Sobic002G053100 Sobic006G104800--Sobic002G053100 Sobic006G104800--Sobic001G158600 Sobic001G129900 Sobic001G129900 Sobic006G104800--Sobic001G129900
Octagon: transcription factors


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