Gene annotation
Transcriptome id Sobic.002G016900.1
Synonym Sb02g001640
Functional annotation OsFBD13 - F-box and FBD domain containing protein, expressed
UniProt C5X817
Pfam -
Panther DB PTHR32212 PTHR32212:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03220 : Protein with RNI-like/FBD-like domains
RAP-DB (Rice) LOC_Os07g02760.1 : OsFBD13 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G016900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G059866 - -
2 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
3 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
5 Sobic.003G174200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G270800 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -
8 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
9 Sobic.003G035500 hexokinase, putative, expressed K00844: hexokinase
10 Sobic.003G230500 "Sh2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659869)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
11 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
12 Sobic.010G207400 protein kinase domain containing protein, expressed -
13 Sobic.004G038900 expressed protein -
14 Sobic.007G015900 - -
15 Sobic.007G095700 Brix domain containing protein, putative, expressed -
16 Sobic.004G338500 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
18 Sobic.005G072400 expressed protein -
19 Sobic.007G198800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
20 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G016900 Sobic002G016900 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic006G203200 Sobic006G203200 Sobic002G016900--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic002G016900--Sobic002G253600 Sobic008G156200 Sobic008G156200 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic003G022200 Sobic003G022200 Sobic002G016900--Sobic003G022200 Sobic003G244700 Sobic003G244700 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic002G059866--Sobic002G016900 Sobic002G059866--Sobic010G270800 Sobic002G059866--Sobic003G022200 Sobic002G059866--Sobic002G253600 Sobic002G059866--Sobic003G244700 Sobic002G019600 Sobic002G019600 Sobic002G059866--Sobic002G019600 Sobic010G262900 Sobic010G262900 Sobic002G059866--Sobic010G262900 Sobic002G059866--Sobic003G174200 Sobic002G059866--Sobic008G156200 Sobic006G203200--Sobic002G016900 Sobic006G203200--Sobic003G244700 Sobic006G203200--Sobic002G253600 Sobic006G120400 Sobic006G120400 Sobic006G203200--Sobic006G120400 Sobic002G341100 Sobic002G341100 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic006G203200--Sobic008G156200 Sobic009G242800 Sobic009G242800 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G253600--Sobic002G016900 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic002G253600--Sobic006G203200 Sobic002G253600--Sobic008G156200 Sobic006G278200 Sobic006G278200 Sobic002G253600--Sobic006G278200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic010G207400 Sobic010G207400 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic008G156200--Sobic003G035500 Sobic004G075700 Sobic004G075700 Sobic008G156200--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic010G112700 Sobic010G112700 Sobic008G156200--Sobic010G112700 Sobic008G156200--Sobic002G016900 Sobic004G038900 Sobic004G038900 Sobic008G156200--Sobic004G038900 Sobic003G230500 Sobic003G230500 Sobic003G174200--Sobic003G230500 Sobic001G037800 Sobic001G037800 Sobic003G174200--Sobic001G037800 Sobic007G034900 Sobic007G034900 Sobic003G174200--Sobic007G034900 Sobic004G261000 Sobic004G261000 Sobic003G174200--Sobic004G261000 Sobic001G158600 Sobic001G158600 Sobic003G174200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic003G174200--Sobic006G051750 Sobic001G253400 Sobic001G253400 Sobic003G174200--Sobic001G253400 Sobic003G135000 Sobic003G135000 Sobic003G174200--Sobic003G135000 Sobic006G104800 Sobic006G104800 Sobic003G174200--Sobic006G104800 Sobic010G270800--Sobic002G016900 Sobic010G270800--Sobic002G059866 Sobic010G270800--Sobic003G022200 Sobic007G078300 Sobic007G078300 Sobic010G270800--Sobic007G078300 Sobic007G209000 Sobic007G209000 Sobic010G270800--Sobic007G209000 Sobic010G270800--Sobic002G253600 Sobic010G270800--Sobic001G130700 Sobic009G090100 Sobic009G090100 Sobic010G270800--Sobic009G090100 Sobic010G270800--Sobic004G038900 Sobic010G189100 Sobic010G189100 Sobic003G022200--Sobic010G189100 Sobic003G022200--Sobic001G130700 Sobic003G022200--Sobic007G078300 Sobic003G022200--Sobic003G035500 Sobic001G041400 Sobic001G041400 Sobic003G022200--Sobic001G041400 Sobic003G022200--Sobic002G253600 Sobic003G022200--Sobic002G016900 Sobic003G022200--Sobic006G278200 Sobic001G033400 Sobic001G033400 Sobic003G022200--Sobic001G033400 Sobic003G244700--Sobic006G203200 Sobic003G244700--Sobic002G253600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic003G035500--Sobic001G033400 Sobic003G035500--Sobic008G156200 Sobic003G035500--Sobic007G078300 Sobic003G035500--Sobic010G189100 Sobic003G035500--Sobic002G247300 Sobic003G035500--Sobic010G207400 Sobic003G035500--Sobic003G174200 Sobic003G035500--Sobic003G412200 Sobic007G091200 Sobic007G091200 Sobic003G035500--Sobic007G091200
Octagon: transcription factors


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