Gene annotation
Transcriptome id Sobic.007G198800.1
Synonym BPM1, ATBPM1, Sb07g026700
Functional annotation BTB/POZ domain containing protein, expressed
UniProt C5YI71
Pfam PF00651
Panther DB PTHR24413 PTHR24413:SF136
NCBI CDD -
KEGG Orthology K10523; speckle-type POZ protein
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G19000 : BTB-POZ and MATH domain 1
RAP-DB (Rice) LOC_Os08g41220.1 : BTB/POZ domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048884
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
2 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
3 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.004G038900 expressed protein -
5 Sobic.007G015900 - -
6 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
7 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
9 Sobic.004G338500 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.007G076500 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
11 Sobic.010G112700 NHL repeat-containing protein, putative, expressed -
12 Sobic.003G000900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@X8 domain containing protein, expressed -
13 Sobic.003G026900 expressed protein -
14 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -
15 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
16 Sobic.008G056200 OsFBX238 - F-box domain containing protein, expressed -
17 Sobic.006G250200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
18 Sobic.002G059866 - -
19 Sobic.005G072400 expressed protein -
20 Sobic.003G022200 DUF538 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G198800 Sobic007G198800 Sobic005G131800 Sobic005G131800 Sobic007G198800--Sobic005G131800 Sobic002G016900 Sobic002G016900 Sobic007G198800--Sobic002G016900 Sobic002G253600 Sobic002G253600 Sobic007G198800--Sobic002G253600 Sobic004G038900 Sobic004G038900 Sobic007G198800--Sobic004G038900 Sobic007G015900 Sobic007G015900 Sobic007G198800--Sobic007G015900 Sobic003G107900 Sobic003G107900 Sobic007G198800--Sobic003G107900 Sobic003G244700 Sobic003G244700 Sobic007G198800--Sobic003G244700 Sobic008G156200 Sobic008G156200 Sobic007G198800--Sobic008G156200 Sobic004G338500 Sobic004G338500 Sobic007G198800--Sobic004G338500 Sobic006G161300 Sobic006G161300 Sobic005G131800--Sobic006G161300 Sobic010G112700 Sobic010G112700 Sobic005G131800--Sobic010G112700 Sobic001G305100 Sobic001G305100 Sobic005G131800--Sobic001G305100 Sobic006G186300 Sobic006G186300 Sobic005G131800--Sobic006G186300 Sobic002G286800 Sobic002G286800 Sobic005G131800--Sobic002G286800 Sobic004G075700 Sobic004G075700 Sobic005G131800--Sobic004G075700 Sobic001G183100 Sobic001G183100 Sobic005G131800--Sobic001G183100 Sobic006G040101 Sobic006G040101 Sobic005G131800--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G131800--Sobic007G025100 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic006G203200 Sobic006G203200 Sobic002G016900--Sobic006G203200 Sobic002G016900--Sobic002G253600 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic003G022200 Sobic003G022200 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G253600--Sobic002G016900 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic002G253600--Sobic006G203200 Sobic002G253600--Sobic008G156200 Sobic006G278200 Sobic006G278200 Sobic002G253600--Sobic006G278200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic005G171800 Sobic005G171800 Sobic004G038900--Sobic005G171800 Sobic007G128400 Sobic007G128400 Sobic004G038900--Sobic007G128400 Sobic010G207400 Sobic010G207400 Sobic004G038900--Sobic010G207400 Sobic003G207100 Sobic003G207100 Sobic004G038900--Sobic003G207100 Sobic003G091500 Sobic003G091500 Sobic004G038900--Sobic003G091500 Sobic002G007700 Sobic002G007700 Sobic004G038900--Sobic002G007700 Sobic005G174500 Sobic005G174500 Sobic004G038900--Sobic005G174500 Sobic010G047300 Sobic010G047300 Sobic004G038900--Sobic010G047300 Sobic008G184100 Sobic008G184100 Sobic004G038900--Sobic008G184100 Sobic007G015900--Sobic002G016900 Sobic007G015900--Sobic007G198800 Sobic007G015900--Sobic002G253600 Sobic007G015900--Sobic003G244700 Sobic007G015900--Sobic008G156200 Sobic007G015900--Sobic010G270800 Sobic007G015900--Sobic002G059866 Sobic004G114000 Sobic004G114000 Sobic007G015900--Sobic004G114000 Sobic010G235500 Sobic010G235500 Sobic007G015900--Sobic010G235500 Sobic001G268700 Sobic001G268700 Sobic003G107900--Sobic001G268700 Sobic002G223300 Sobic002G223300 Sobic003G107900--Sobic002G223300 Sobic003G107900--Sobic003G244700 Sobic001G372900 Sobic001G372900 Sobic003G107900--Sobic001G372900 Sobic010G013500 Sobic010G013500 Sobic003G107900--Sobic010G013500 Sobic008G172200 Sobic008G172200 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic004G189700 Sobic004G189700 Sobic003G107900--Sobic004G189700 Sobic006G073100 Sobic006G073100 Sobic003G107900--Sobic006G073100 Sobic003G244700--Sobic006G203200 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic003G244700--Sobic010G235500 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic008G156200--Sobic003G035500 Sobic008G156200--Sobic004G075700 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic008G156200--Sobic010G112700 Sobic008G156200--Sobic002G016900 Sobic008G156200--Sobic004G038900 Sobic004G338500--Sobic002G286800 Sobic004G338500--Sobic005G131800 Sobic004G338500--Sobic006G161300 Sobic008G064100 Sobic008G064100 Sobic004G338500--Sobic008G064100 Sobic005G035500 Sobic005G035500 Sobic004G338500--Sobic005G035500 Sobic005G098700 Sobic005G098700 Sobic004G338500--Sobic005G098700 Sobic004G338500--Sobic002G016900 Sobic008G082300 Sobic008G082300 Sobic004G338500--Sobic008G082300 Sobic004G338500--Sobic007G025100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.