Gene annotation
Transcriptome id Sobic.003G000900.1
Synonym Sb03g000270
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
X8 domain containing protein, expressed
UniProt C5XJH0
Pfam PF07983
Panther DB PTHR31044 PTHR31044:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43670 : Carbohydrate-binding X8 domain superfamily protein
RAP-DB (Rice) LOC_Os01g14140.1 : X8 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011012 , Zm00025a022764
Brachypodium KQK03560
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G198800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
2 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
3 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
4 Sobic.008G172200 CIN-like (ClassII) Subclade 12 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
5 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
6 Sobic.002G355600 - -
7 Sobic.004G197900 - -
8 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
9 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
10 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
11 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
12 Sobic.004G148600 ankyrin, putative, expressed -
13 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
14 Sobic.001G184800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.010G237650 - -
16 Sobic.006G028700 expressed protein -
17 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
18 Sobic.002G182300 - -
19 Sobic.001G444500 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.003G156766 - -


Gene co-expression network
sample Sobic003G000900 Sobic003G000900 Sobic007G198800 Sobic007G198800 Sobic003G000900--Sobic007G198800 Sobic006G022500 Sobic006G022500 Sobic003G000900--Sobic006G022500 Sobic003G107900 Sobic003G107900 Sobic003G000900--Sobic003G107900 Sobic008G172200 Sobic008G172200 Sobic003G000900--Sobic008G172200 Sobic003G412100 Sobic003G412100 Sobic003G000900--Sobic003G412100 Sobic002G355600 Sobic002G355600 Sobic003G000900--Sobic002G355600 Sobic004G197900 Sobic004G197900 Sobic003G000900--Sobic004G197900 Sobic010G235500 Sobic010G235500 Sobic003G000900--Sobic010G235500 Sobic002G334600 Sobic002G334600 Sobic003G000900--Sobic002G334600 Sobic005G131800 Sobic005G131800 Sobic007G198800--Sobic005G131800 Sobic002G016900 Sobic002G016900 Sobic007G198800--Sobic002G016900 Sobic002G253600 Sobic002G253600 Sobic007G198800--Sobic002G253600 Sobic004G038900 Sobic004G038900 Sobic007G198800--Sobic004G038900 Sobic007G015900 Sobic007G015900 Sobic007G198800--Sobic007G015900 Sobic007G198800--Sobic003G107900 Sobic003G244700 Sobic003G244700 Sobic007G198800--Sobic003G244700 Sobic008G156200 Sobic008G156200 Sobic007G198800--Sobic008G156200 Sobic004G338500 Sobic004G338500 Sobic007G198800--Sobic004G338500 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic001G384600 Sobic001G384600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic004G189700 Sobic004G189700 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022400 Sobic006G022400 Sobic006G022500--Sobic006G022400 Sobic005G177900 Sobic005G177900 Sobic006G022500--Sobic005G177900 Sobic001G268700 Sobic001G268700 Sobic003G107900--Sobic001G268700 Sobic002G223300 Sobic002G223300 Sobic003G107900--Sobic002G223300 Sobic003G107900--Sobic003G244700 Sobic001G372900 Sobic001G372900 Sobic003G107900--Sobic001G372900 Sobic010G013500 Sobic010G013500 Sobic003G107900--Sobic010G013500 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic003G107900--Sobic004G189700 Sobic006G073100 Sobic006G073100 Sobic003G107900--Sobic006G073100 Sobic008G172200--Sobic001G372900 Sobic001G212600 Sobic001G212600 Sobic008G172200--Sobic001G212600 Sobic003G351900 Sobic003G351900 Sobic008G172200--Sobic003G351900 Sobic008G172200--Sobic003G107900 Sobic001G157100 Sobic001G157100 Sobic008G172200--Sobic001G157100 Sobic008G172200--Sobic002G334600 Sobic001G499200 Sobic001G499200 Sobic008G172200--Sobic001G499200 Sobic009G064900 Sobic009G064900 Sobic008G172200--Sobic009G064900 Sobic008G172200--Sobic002G223300 Sobic003G412100--Sobic003G244700 Sobic003G412100--Sobic002G334600 Sobic003G412100--Sobic010G235500 Sobic003G184400 Sobic003G184400 Sobic003G412100--Sobic003G184400 Sobic005G040900 Sobic005G040900 Sobic003G412100--Sobic005G040900 Sobic002G105000 Sobic002G105000 Sobic003G412100--Sobic002G105000 Sobic005G009200 Sobic005G009200 Sobic003G412100--Sobic005G009200 Sobic002G362300 Sobic002G362300 Sobic003G412100--Sobic002G362300 Sobic001G346700 Sobic001G346700 Sobic003G412100--Sobic001G346700 Sobic003G091200 Sobic003G091200 Sobic002G355600--Sobic003G091200 Sobic004G229700 Sobic004G229700 Sobic002G355600--Sobic004G229700 Sobic004G207000 Sobic004G207000 Sobic002G355600--Sobic004G207000 Sobic002G355600--Sobic006G022400 Sobic004G149400 Sobic004G149400 Sobic002G355600--Sobic004G149400 Sobic007G121700 Sobic007G121700 Sobic002G355600--Sobic007G121700 Sobic009G216500 Sobic009G216500 Sobic002G355600--Sobic009G216500 Sobic005G162900 Sobic005G162900 Sobic002G355600--Sobic005G162900 Sobic002G302600 Sobic002G302600 Sobic002G355600--Sobic002G302600 Sobic008G117200 Sobic008G117200 Sobic004G197900--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic004G197900--Sobic002G421700 Sobic008G152900 Sobic008G152900 Sobic004G197900--Sobic008G152900 Sobic006G128800 Sobic006G128800 Sobic004G197900--Sobic006G128800 Sobic001G425000 Sobic001G425000 Sobic004G197900--Sobic001G425000 Sobic002G051450 Sobic002G051450 Sobic004G197900--Sobic002G051450 Sobic005G015100 Sobic005G015100 Sobic004G197900--Sobic005G015100 Sobic008G034600 Sobic008G034600 Sobic004G197900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G197900--Sobic010G263800 Sobic010G235500--Sobic003G244700 Sobic010G235500--Sobic002G223300 Sobic010G235500--Sobic003G412100 Sobic010G173900 Sobic010G173900 Sobic010G235500--Sobic010G173900 Sobic006G028700 Sobic006G028700 Sobic010G235500--Sobic006G028700 Sobic010G235500--Sobic004G197900 Sobic003G343600 Sobic003G343600 Sobic010G235500--Sobic003G343600 Sobic010G235500--Sobic001G045700 Sobic006G039900 Sobic006G039900 Sobic010G235500--Sobic006G039900 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200
Octagon: transcription factors


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