Gene annotation
Transcriptome id Sobic.006G028700.1,Sobic.006G028700.2,Sobic.006G028700.3
Synonym Sb06g002953
Functional annotation expressed protein
UniProt A0A1B6PJR4 , A0A1B6PJP7 , A0A1B6PJP1
Pfam PF04195
Panther DB PTHR33026 PTHR33026:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os05g34370.1,LOC_Os11g32000.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a055607
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G028700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000400 expressed protein -
2 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
3 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
4 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
5 Sobic.005G154700 OsFBX407 - F-box domain containing protein, expressed -
6 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
7 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
8 Sobic.005G064700 expressed protein -
9 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
10 Sobic.001G522400 FHA domain containing protein, putative, expressed -
11 Sobic.003G045200 expressed protein K18404: tudor domain-containing protein 3
12 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
13 Sobic.005G127300 expressed protein K14289: exportin-5
14 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
15 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
16 Sobic.001G085700 STE_PAK_Ste20_KHSh_GCKh_HPKh.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
18 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
19 Sobic.002G105000 OsFBD15 - F-box and FBD domain containing protein, expressed -
20 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1


Gene co-expression network
sample Sobic006G028700 Sobic006G028700 Sobic009G000400 Sobic009G000400 Sobic006G028700--Sobic009G000400 Sobic009G074700 Sobic009G074700 Sobic006G028700--Sobic009G074700 Sobic006G180700 Sobic006G180700 Sobic006G028700--Sobic006G180700 Sobic001G090300 Sobic001G090300 Sobic006G028700--Sobic001G090300 Sobic005G154700 Sobic005G154700 Sobic006G028700--Sobic005G154700 Sobic004G149800 Sobic004G149800 Sobic006G028700--Sobic004G149800 Sobic001G246500 Sobic001G246500 Sobic006G028700--Sobic001G246500 Sobic005G064700 Sobic005G064700 Sobic006G028700--Sobic005G064700 Sobic007G000400 Sobic007G000400 Sobic006G028700--Sobic007G000400 Sobic009G000400--Sobic009G074700 Sobic009G000400--Sobic006G028700 Sobic009G040800 Sobic009G040800 Sobic009G000400--Sobic009G040800 Sobic009G000400--Sobic006G180700 Sobic002G115500 Sobic002G115500 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic005G040900 Sobic005G040900 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic001G085700 Sobic001G085700 Sobic009G000400--Sobic001G085700 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic010G278600 Sobic010G278600 Sobic009G074700--Sobic010G278600 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic006G180700--Sobic009G074700 Sobic006G180700--Sobic001G085700 Sobic006G180700--Sobic006G138000 Sobic006G180700--Sobic009G040800 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic006G180700--Sobic005G040900 Sobic005G199200 Sobic005G199200 Sobic001G090300--Sobic005G199200 Sobic009G113100 Sobic009G113100 Sobic001G090300--Sobic009G113100 Sobic001G090300--Sobic005G040900 Sobic003G415100 Sobic003G415100 Sobic001G090300--Sobic003G415100 Sobic001G090300--Sobic009G074700 Sobic007G187600 Sobic007G187600 Sobic001G090300--Sobic007G187600 Sobic009G129600 Sobic009G129600 Sobic001G090300--Sobic009G129600 Sobic001G090300--Sobic009G000400 Sobic001G334100 Sobic001G334100 Sobic001G090300--Sobic001G334100 Sobic004G012000 Sobic004G012000 Sobic005G154700--Sobic004G012000 Sobic004G026100 Sobic004G026100 Sobic005G154700--Sobic004G026100 Sobic004G197900 Sobic004G197900 Sobic005G154700--Sobic004G197900 Sobic005G154700--Sobic009G040800 Sobic005G015100 Sobic005G015100 Sobic005G154700--Sobic005G015100 Sobic005G127300 Sobic005G127300 Sobic005G154700--Sobic005G127300 Sobic005G154700--Sobic009G000400 Sobic010G235600 Sobic010G235600 Sobic005G154700--Sobic010G235600 Sobic007G079200 Sobic007G079200 Sobic005G154700--Sobic007G079200 Sobic004G149800--Sobic009G074700 Sobic004G149800--Sobic006G028700 Sobic001G088900 Sobic001G088900 Sobic004G149800--Sobic001G088900 Sobic009G213100 Sobic009G213100 Sobic004G149800--Sobic009G213100 Sobic004G149800--Sobic009G000400 Sobic004G149800--Sobic005G199200 Sobic006G131200 Sobic006G131200 Sobic004G149800--Sobic006G131200 Sobic004G128200 Sobic004G128200 Sobic004G149800--Sobic004G128200 Sobic004G149800--Sobic010G278600 Sobic008G173100 Sobic008G173100 Sobic001G246500--Sobic008G173100 Sobic010G096000 Sobic010G096000 Sobic001G246500--Sobic010G096000 Sobic001G246500--Sobic009G074700 Sobic001G246500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic001G246500--Sobic001G306900 Sobic001G246500--Sobic009G195200 Sobic004G086200 Sobic004G086200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic009G151200 Sobic009G151200 Sobic001G246500--Sobic009G151200 Sobic008G106600 Sobic008G106600 Sobic005G064700--Sobic008G106600 Sobic001G261537 Sobic001G261537 Sobic005G064700--Sobic001G261537 Sobic005G064700--Sobic006G028700 Sobic003G068750 Sobic003G068750 Sobic005G064700--Sobic003G068750 Sobic004G089500 Sobic004G089500 Sobic005G064700--Sobic004G089500 Sobic009G228400 Sobic009G228400 Sobic005G064700--Sobic009G228400 Sobic005G064700--Sobic009G000400 Sobic002G019750 Sobic002G019750 Sobic005G064700--Sobic002G019750 Sobic004G068100 Sobic004G068100 Sobic005G064700--Sobic004G068100 Sobic008G056900 Sobic008G056900 Sobic007G000400--Sobic008G056900 Sobic001G522400 Sobic001G522400 Sobic007G000400--Sobic001G522400 Sobic006G242401 Sobic006G242401 Sobic007G000400--Sobic006G242401 Sobic001G045700 Sobic001G045700 Sobic007G000400--Sobic001G045700 Sobic009G096100 Sobic009G096100 Sobic007G000400--Sobic009G096100 Sobic002G380100 Sobic002G380100 Sobic007G000400--Sobic002G380100 Sobic007G000400--Sobic004G128200 Sobic003G163100 Sobic003G163100 Sobic007G000400--Sobic003G163100 Sobic010G143200 Sobic010G143200 Sobic007G000400--Sobic010G143200
Octagon: transcription factors


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