Gene annotation
Transcriptome id Sobic.006G131200.1,Sobic.006G131200.2
Synonym NRPC1, Sb06g021120
Functional annotation DNA-directed RNA polymerase III subunit RPC1, putative, expressed
UniProt C5YBD9 , A0A1Z5REH5
Pfam PF05000 PF04983 PF04997 PF00623 PF04998 PF05000 PF04983 PF04998 PF04997 PF00623
Panther DB PTHR19376 PTHR19376:SF32
NCBI CDD -
KEGG Orthology K03018; RPC1, DNA-directed RNA polymerase III subunit RPC1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G60040 : nuclear RNA polymerase C1
RAP-DB (Rice) LOC_Os04g41490.1 : DNA-directed RNA polymerase III subunit RPC1, putative, expressed
MaizeGDB (Corn) Zm00025a010881
Brachypodium KQJ92760 , KQJ92761 , KQJ92762 , KQJ99397 , PNT68584
Barley HORVU1Hr1G025160.22 , HORVU1Hr1G025160.23 , HORVU1Hr1G025160.20 , HORVU1Hr1G025160.21 , HORVU1Hr1G025160.24 , HORVU1Hr1G025160.25 , HORVU1Hr1G025160.26 , HORVU1Hr1G025160.27 , HORVU1Hr1G025160.19 , HORVU1Hr1G025160.15 , HORVU1Hr1G025160.14 , HORVU1Hr1G025160.17 , HORVU1Hr1G025160.16 , HORVU1Hr1G025160.11 , HORVU1Hr1G025160.10 , HORVU1Hr1G025160.13 , HORVU1Hr1G025160.12 , HORVU4Hr1G085240.1 , HORVU6Hr1G027050.12 , HORVU6Hr1G027050.13 , HORVU6Hr1G027050.10 , HORVU6Hr1G027050.11 , HORVU6Hr1G027050.8 , HORVU6Hr1G027050.9 , HORVU7Hr1G011970.1 , HORVU6Hr1G027050.1 , HORVU6Hr1G027050.2 , HORVU6Hr1G027050.3 , HORVU6Hr1G027050.4 , HORVU6Hr1G027050.5 , HORVU6Hr1G027050.6 , HORVU6Hr1G027050.7 , HORVU1Hr1G025160.9 , HORVU1Hr1G025160.8 , HORVU1Hr1G025160.1 , HORVU1Hr1G025160.3 , HORVU1Hr1G025160.2 , HORVU1Hr1G025160.5 , HORVU1Hr1G025160.4 , HORVU1Hr1G025160.7 , HORVU1Hr1G025160.6
Wheat TraesCS3A02G455500 , TraesCS1D02G115900 , TraesCS1D02G115900 , TraesCS1D02G115900 , TraesCS1D02G115900 , TraesCS3D02G448000 , TraesCS1B02G134500 , TraesCS3B02G494500 , TraesCS1A02G114600 , TraesCS1A02G114500
Populus PNT58155 , PNT58157 , PNT58156


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
2 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
3 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
4 Sobic.004G086200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09566: peptidyl-prolyl isomerase G (cyclophilin G)
5 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
6 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
7 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
8 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
9 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
10 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
11 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
12 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
13 Sobic.002G063900 zinc ion binding protein, putative, expressed -
14 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
15 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
16 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
17 Sobic.009G000400 expressed protein -
18 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
20 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit


Gene co-expression network
sample Sobic006G131200 Sobic006G131200 Sobic003G042400 Sobic003G042400 Sobic006G131200--Sobic003G042400 Sobic009G074700 Sobic009G074700 Sobic006G131200--Sobic009G074700 Sobic001G246500 Sobic001G246500 Sobic006G131200--Sobic001G246500 Sobic004G086200 Sobic004G086200 Sobic006G131200--Sobic004G086200 Sobic010G278600 Sobic010G278600 Sobic006G131200--Sobic010G278600 Sobic002G079100 Sobic002G079100 Sobic006G131200--Sobic002G079100 Sobic001G346900 Sobic001G346900 Sobic006G131200--Sobic001G346900 Sobic009G040800 Sobic009G040800 Sobic006G131200--Sobic009G040800 Sobic006G180700 Sobic006G180700 Sobic006G131200--Sobic006G180700 Sobic007G168300 Sobic007G168300 Sobic003G042400--Sobic007G168300 Sobic001G376900 Sobic001G376900 Sobic003G042400--Sobic001G376900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic001G145400 Sobic001G145400 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic009G074700--Sobic010G278600 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G000400 Sobic009G000400 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic008G173100 Sobic008G173100 Sobic001G246500--Sobic008G173100 Sobic010G096000 Sobic010G096000 Sobic001G246500--Sobic010G096000 Sobic001G246500--Sobic009G074700 Sobic001G246500--Sobic002G259800 Sobic001G306900 Sobic001G306900 Sobic001G246500--Sobic001G306900 Sobic001G246500--Sobic009G195200 Sobic001G246500--Sobic004G086200 Sobic006G013500 Sobic006G013500 Sobic001G246500--Sobic006G013500 Sobic009G151200 Sobic009G151200 Sobic001G246500--Sobic009G151200 Sobic004G086200--Sobic001G346900 Sobic004G285000 Sobic004G285000 Sobic004G086200--Sobic004G285000 Sobic001G134300 Sobic001G134300 Sobic004G086200--Sobic001G134300 Sobic001G245900 Sobic001G245900 Sobic004G086200--Sobic001G245900 Sobic004G086200--Sobic001G306900 Sobic004G086200--Sobic010G096000 Sobic010G279900 Sobic010G279900 Sobic004G086200--Sobic010G279900 Sobic004G086200--Sobic001G246500 Sobic010G065300 Sobic010G065300 Sobic004G086200--Sobic010G065300 Sobic010G278600--Sobic009G040800 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic008G080500 Sobic008G080500 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic001G346900--Sobic004G086200 Sobic003G409200 Sobic003G409200 Sobic001G346900--Sobic003G409200 Sobic001G346900--Sobic001G134300 Sobic001G346900--Sobic003G042400 Sobic001G346900--Sobic008G147200 Sobic001G346900--Sobic004G285000 Sobic003G416700 Sobic003G416700 Sobic001G346900--Sobic003G416700 Sobic001G346900--Sobic010G096000 Sobic002G422100 Sobic002G422100 Sobic001G346900--Sobic002G422100 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic009G040800--Sobic004G246100 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G180700--Sobic006G138000 Sobic006G180700--Sobic009G040800 Sobic006G180700--Sobic009G000400 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G180700--Sobic006G091000 Sobic006G180700--Sobic005G040900
Octagon: transcription factors


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