Gene annotation
Transcriptome id Sobic.004G149800.1
Synonym 5-methylcytosine DNA glycosylase, SbDME, DME, Sb04g019820
Functional annotation transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters (PubMedID : 23184965)
hhH-GPD superfamily base excision DNA repair protein, expressed
UniProt A0A194YPX0 , F6M1S1
Pfam PF15629 PF15628
Panther DB PTHR10359 PTHR10359:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04560 : HhH-GPD base excision DNA repair family protein
RAP-DB (Rice) LOC_Os01g11900.1 : hhH-GPD superfamily base excision DNA repair protein, expressed
MaizeGDB (Corn) Zm00025a020351 , Zm00025a034252
Brachypodium KQJ86995 , KQK05991 , KQK05992 , PNT62848 , KQJ99522 , PNT71154 , PNT71155 , PNT71156 , PNT71153
Barley -
Wheat TraesCS5D02G173300 , TraesCS5D02G173300 , TraesCS5A02G169000 , TraesCS1A02G349600 , TraesCS1B02G364100 , TraesCS1B02G364100 , TraesCS1D02G352500 , TraesCS1D02G352500 , TraesCS1D02G352500 , TraesCS5B02G165800 , TraesCS5B02G165800
Populus PNT18303 , PNT18304 , PNT18305


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cDNA sequences
Sobic.004G149800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
2 Sobic.006G028700 expressed protein -
3 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
4 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase
5 Sobic.009G000400 expressed protein -
6 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
7 Sobic.006G131200 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03018: RPC1, DNA-directed RNA polymerase III subunit RPC1
8 Sobic.004G128200 Probable LRR receptor-like serine/threonine-protein kinase At5g10290(PubMedID : 31721651)@BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
9 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
10 Sobic.008G152300 expressed protein K15208: snRNA-activating protein complex subunit 1
11 Sobic.007G000400 B3 DNA binding domain containing protein, expressed -
12 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
13 Sobic.001G090300 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
14 Sobic.002G033700 AIR9 protein, putative, expressed -
15 Sobic.007G077700 expressed protein -
16 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
17 Sobic.010G091500 pentatricopeptide, putative, expressed -
18 Sobic.003G067201 - -
19 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
20 Sobic.009G055400 expressed protein -


Gene co-expression network
sample Sobic004G149800 Sobic004G149800 Sobic009G074700 Sobic009G074700 Sobic004G149800--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic004G149800--Sobic006G028700 Sobic001G088900 Sobic001G088900 Sobic004G149800--Sobic001G088900 Sobic009G213100 Sobic009G213100 Sobic004G149800--Sobic009G213100 Sobic009G000400 Sobic009G000400 Sobic004G149800--Sobic009G000400 Sobic005G199200 Sobic005G199200 Sobic004G149800--Sobic005G199200 Sobic006G131200 Sobic006G131200 Sobic004G149800--Sobic006G131200 Sobic004G128200 Sobic004G128200 Sobic004G149800--Sobic004G128200 Sobic010G278600 Sobic010G278600 Sobic004G149800--Sobic010G278600 Sobic001G246500 Sobic001G246500 Sobic009G074700--Sobic001G246500 Sobic010G202600 Sobic010G202600 Sobic009G074700--Sobic010G202600 Sobic009G074700--Sobic010G278600 Sobic006G180700 Sobic006G180700 Sobic009G074700--Sobic006G180700 Sobic002G259800 Sobic002G259800 Sobic009G074700--Sobic002G259800 Sobic009G074700--Sobic009G000400 Sobic002G262700 Sobic002G262700 Sobic009G074700--Sobic002G262700 Sobic009G195200 Sobic009G195200 Sobic009G074700--Sobic009G195200 Sobic006G138000 Sobic006G138000 Sobic009G074700--Sobic006G138000 Sobic006G028700--Sobic009G000400 Sobic006G028700--Sobic009G074700 Sobic006G028700--Sobic006G180700 Sobic001G090300 Sobic001G090300 Sobic006G028700--Sobic001G090300 Sobic005G154700 Sobic005G154700 Sobic006G028700--Sobic005G154700 Sobic006G028700--Sobic004G149800 Sobic006G028700--Sobic001G246500 Sobic005G064700 Sobic005G064700 Sobic006G028700--Sobic005G064700 Sobic007G000400 Sobic007G000400 Sobic006G028700--Sobic007G000400 Sobic010G279900 Sobic010G279900 Sobic001G088900--Sobic010G279900 Sobic001G245900 Sobic001G245900 Sobic001G088900--Sobic001G245900 Sobic001G367100 Sobic001G367100 Sobic001G088900--Sobic001G367100 Sobic001G088900--Sobic006G180700 Sobic001G088900--Sobic009G000400 Sobic001G034500 Sobic001G034500 Sobic001G088900--Sobic001G034500 Sobic010G269300 Sobic010G269300 Sobic001G088900--Sobic010G269300 Sobic001G222000 Sobic001G222000 Sobic001G088900--Sobic001G222000 Sobic001G261585 Sobic001G261585 Sobic001G088900--Sobic001G261585 Sobic002G409800 Sobic002G409800 Sobic009G213100--Sobic002G409800 Sobic002G076000 Sobic002G076000 Sobic009G213100--Sobic002G076000 Sobic001G507900 Sobic001G507900 Sobic009G213100--Sobic001G507900 Sobic001G017600 Sobic001G017600 Sobic009G213100--Sobic001G017600 Sobic009G062900 Sobic009G062900 Sobic009G213100--Sobic009G062900 Sobic003G070100 Sobic003G070100 Sobic009G213100--Sobic003G070100 Sobic002G079100 Sobic002G079100 Sobic009G213100--Sobic002G079100 Sobic006G215050 Sobic006G215050 Sobic009G213100--Sobic006G215050 Sobic006G217200 Sobic006G217200 Sobic009G213100--Sobic006G217200 Sobic009G000400--Sobic009G074700 Sobic009G000400--Sobic006G028700 Sobic009G040800 Sobic009G040800 Sobic009G000400--Sobic009G040800 Sobic009G000400--Sobic006G180700 Sobic002G115500 Sobic002G115500 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic005G040900 Sobic005G040900 Sobic009G000400--Sobic005G040900 Sobic009G000400--Sobic010G279900 Sobic001G085700 Sobic001G085700 Sobic009G000400--Sobic001G085700 Sobic005G199200--Sobic001G090300 Sobic003G184400 Sobic003G184400 Sobic005G199200--Sobic003G184400 Sobic005G199200--Sobic004G128200 Sobic001G334100 Sobic001G334100 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic001G373000 Sobic001G373000 Sobic005G199200--Sobic001G373000 Sobic005G199200--Sobic010G278600 Sobic002G142600 Sobic002G142600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic003G042400 Sobic003G042400 Sobic006G131200--Sobic003G042400 Sobic006G131200--Sobic009G074700 Sobic006G131200--Sobic001G246500 Sobic004G086200 Sobic004G086200 Sobic006G131200--Sobic004G086200 Sobic006G131200--Sobic010G278600 Sobic006G131200--Sobic002G079100 Sobic001G346900 Sobic001G346900 Sobic006G131200--Sobic001G346900 Sobic006G131200--Sobic009G040800 Sobic006G131200--Sobic006G180700 Sobic004G128200--Sobic005G199200 Sobic004G128200--Sobic001G367100 Sobic004G128200--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic004G128200--Sobic001G315400 Sobic003G409200 Sobic003G409200 Sobic004G128200--Sobic003G409200 Sobic004G128200--Sobic001G090300 Sobic002G145800 Sobic002G145800 Sobic004G128200--Sobic002G145800 Sobic007G183300 Sobic007G183300 Sobic004G128200--Sobic007G183300 Sobic008G017100 Sobic008G017100 Sobic004G128200--Sobic008G017100 Sobic010G278600--Sobic009G040800 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic004G285000 Sobic004G285000 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic004G246100 Sobic004G246100 Sobic010G278600--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic010G278600--Sobic001G042200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700
Octagon: transcription factors


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