Gene annotation
Transcriptome id Sobic.008G152300.2,Sobic.008G152300.3,Sobic.008G152300.1
Synonym Sb08g020140
Functional annotation expressed protein
UniProt C5YR02 , A0A1B6PDX3
Pfam PF09808
Panther DB PTHR15131
NCBI CDD -
KEGG Orthology K15208; snRNA-activating protein complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53270 : Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
RAP-DB (Rice) LOC_Os10g35130.1 : expressed protein
MaizeGDB (Corn) Zm00025a043776 , Zm00025a004548
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G091500 pentatricopeptide, putative, expressed -
2 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
3 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
4 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
5 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
6 Sobic.003G067201 - -
7 Sobic.002G142600 NLI interacting factor-like phosphatase, putative, expressed -
8 Sobic.006G028700 expressed protein -
9 Sobic.006G069100 pentatricopeptide, putative, expressed -
10 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
11 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
12 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
13 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
14 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
15 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
16 Sobic.003G124600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
17 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
18 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
19 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic008G152300 Sobic008G152300 Sobic010G091500 Sobic010G091500 Sobic008G152300--Sobic010G091500 Sobic002G344500 Sobic002G344500 Sobic008G152300--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic008G152300--Sobic002G380100 Sobic001G334100 Sobic001G334100 Sobic008G152300--Sobic001G334100 Sobic004G149800 Sobic004G149800 Sobic008G152300--Sobic004G149800 Sobic003G067201 Sobic003G067201 Sobic008G152300--Sobic003G067201 Sobic002G142600 Sobic002G142600 Sobic008G152300--Sobic002G142600 Sobic006G028700 Sobic006G028700 Sobic008G152300--Sobic006G028700 Sobic006G069100 Sobic006G069100 Sobic008G152300--Sobic006G069100 Sobic005G000300 Sobic005G000300 Sobic010G091500--Sobic005G000300 Sobic003G322200 Sobic003G322200 Sobic010G091500--Sobic003G322200 Sobic010G091500--Sobic008G152300 Sobic010G091500--Sobic006G069100 Sobic010G091500--Sobic003G067201 Sobic005G028300 Sobic005G028300 Sobic010G091500--Sobic005G028300 Sobic002G084400 Sobic002G084400 Sobic010G091500--Sobic002G084400 Sobic010G091500--Sobic002G344500 Sobic006G208400 Sobic006G208400 Sobic010G091500--Sobic006G208400 Sobic002G344500--Sobic003G322200 Sobic001G322600 Sobic001G322600 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic003G407600 Sobic003G407600 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic002G344500--Sobic008G152300 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic002G380100--Sobic009G096100 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic001G334100--Sobic005G000300 Sobic009G074700 Sobic009G074700 Sobic004G149800--Sobic009G074700 Sobic004G149800--Sobic006G028700 Sobic001G088900 Sobic001G088900 Sobic004G149800--Sobic001G088900 Sobic009G213100 Sobic009G213100 Sobic004G149800--Sobic009G213100 Sobic009G000400 Sobic009G000400 Sobic004G149800--Sobic009G000400 Sobic004G149800--Sobic005G199200 Sobic006G131200 Sobic006G131200 Sobic004G149800--Sobic006G131200 Sobic004G128200 Sobic004G128200 Sobic004G149800--Sobic004G128200 Sobic010G278600 Sobic010G278600 Sobic004G149800--Sobic010G278600 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic003G067201--Sobic010G091500 Sobic002G142600--Sobic006G226300 Sobic009G235200 Sobic009G235200 Sobic002G142600--Sobic009G235200 Sobic002G142600--Sobic005G199200 Sobic002G142600--Sobic001G334100 Sobic002G142600--Sobic003G184400 Sobic002G142600--Sobic009G074700 Sobic002G142600--Sobic006G131200 Sobic006G185200 Sobic006G185200 Sobic002G142600--Sobic006G185200 Sobic010G007100 Sobic010G007100 Sobic002G142600--Sobic010G007100 Sobic006G028700--Sobic009G000400 Sobic006G028700--Sobic009G074700 Sobic006G028700--Sobic006G180700 Sobic001G090300 Sobic001G090300 Sobic006G028700--Sobic001G090300 Sobic005G154700 Sobic005G154700 Sobic006G028700--Sobic005G154700 Sobic006G028700--Sobic004G149800 Sobic001G246500 Sobic001G246500 Sobic006G028700--Sobic001G246500 Sobic005G064700 Sobic005G064700 Sobic006G028700--Sobic005G064700 Sobic007G000400 Sobic007G000400 Sobic006G028700--Sobic007G000400 Sobic004G241000 Sobic004G241000 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G085900 Sobic006G085900 Sobic006G069100--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100
Octagon: transcription factors


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