Gene annotation
Transcriptome id Sobic.010G091500.1
Synonym Sb10g007970
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Z719
Pfam PF13812 PF13041 PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF717
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G34160 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g17080.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a049486
Brachypodium KQK18890
Barley HORVU0Hr1G019780.1
Wheat -
Populus -


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cDNA sequences
Sobic.010G091500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
2 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
3 Sobic.008G152300 expressed protein K15208: snRNA-activating protein complex subunit 1
4 Sobic.006G069100 pentatricopeptide, putative, expressed -
5 Sobic.003G067201 - -
6 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
7 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
9 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
10 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
11 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
12 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
13 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
14 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
15 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
16 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
17 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
19 Sobic.002G423400 PPR repeat containing protein, expressed -
20 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic010G091500 Sobic010G091500 Sobic005G000300 Sobic005G000300 Sobic010G091500--Sobic005G000300 Sobic003G322200 Sobic003G322200 Sobic010G091500--Sobic003G322200 Sobic008G152300 Sobic008G152300 Sobic010G091500--Sobic008G152300 Sobic006G069100 Sobic006G069100 Sobic010G091500--Sobic006G069100 Sobic003G067201 Sobic003G067201 Sobic010G091500--Sobic003G067201 Sobic005G028300 Sobic005G028300 Sobic010G091500--Sobic005G028300 Sobic002G084400 Sobic002G084400 Sobic010G091500--Sobic002G084400 Sobic002G344500 Sobic002G344500 Sobic010G091500--Sobic002G344500 Sobic006G208400 Sobic006G208400 Sobic010G091500--Sobic006G208400 Sobic002G112600 Sobic002G112600 Sobic005G000300--Sobic002G112600 Sobic004G031300 Sobic004G031300 Sobic005G000300--Sobic004G031300 Sobic005G000300--Sobic010G091500 Sobic003G123200 Sobic003G123200 Sobic005G000300--Sobic003G123200 Sobic010G224700 Sobic010G224700 Sobic005G000300--Sobic010G224700 Sobic001G334100 Sobic001G334100 Sobic005G000300--Sobic001G334100 Sobic009G246500 Sobic009G246500 Sobic005G000300--Sobic009G246500 Sobic002G378100 Sobic002G378100 Sobic005G000300--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic005G000300--Sobic008G163500 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic008G152300--Sobic010G091500 Sobic008G152300--Sobic002G344500 Sobic002G380100 Sobic002G380100 Sobic008G152300--Sobic002G380100 Sobic008G152300--Sobic001G334100 Sobic004G149800 Sobic004G149800 Sobic008G152300--Sobic004G149800 Sobic008G152300--Sobic003G067201 Sobic002G142600 Sobic002G142600 Sobic008G152300--Sobic002G142600 Sobic006G028700 Sobic006G028700 Sobic008G152300--Sobic006G028700 Sobic008G152300--Sobic006G069100 Sobic004G241000 Sobic004G241000 Sobic006G069100--Sobic004G241000 Sobic004G256900 Sobic004G256900 Sobic006G069100--Sobic004G256900 Sobic010G068900 Sobic010G068900 Sobic006G069100--Sobic010G068900 Sobic010G190900 Sobic010G190900 Sobic006G069100--Sobic010G190900 Sobic006G085900 Sobic006G085900 Sobic006G069100--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic006G069100--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic006G069100--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic006G069100--Sobic009G116400 Sobic004G025100 Sobic004G025100 Sobic006G069100--Sobic004G025100 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic003G067201--Sobic010G091500 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic003G419800 Sobic003G419800 Sobic005G028300--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic005G028300--Sobic003G014700 Sobic001G391101 Sobic001G391101 Sobic005G028300--Sobic001G391101 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic002G084400--Sobic006G085900 Sobic002G084400--Sobic002G251800 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic008G171500 Sobic008G171500 Sobic002G084400--Sobic008G171500 Sobic002G084400--Sobic003G067201 Sobic002G344500--Sobic003G322200 Sobic001G322600 Sobic001G322600 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic003G407600 Sobic003G407600 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic002G344500--Sobic008G152300 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic001G460500 Sobic001G460500 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700
Octagon: transcription factors


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