Gene annotation
Transcriptome id Sobic.003G419800.2
Synonym
Functional annotation pentatricopeptide repeat protein PPR1106-17, putative, expressed
UniProt A0A1W0W1D9
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF402
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19220 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g71180.1 : pentatricopeptide repeat protein PPR1106-17, putative, expressed
MaizeGDB (Corn) Zm00025a039172
Brachypodium -
Barley HORVU3Hr1G101950.5 , HORVU3Hr1G101950.4 , HORVU3Hr1G101950.3 , HORVU3Hr1G101950.2 , HORVU3Hr1G101950.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G419800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
2 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.007G179600 pentatricopeptide, putative, expressed -
4 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G391101 - -
7 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.003G014700 pentatricopeptide, putative, expressed -
9 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
11 Sobic.002G240900 pentatricopeptide, putative, expressed -
12 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
13 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
14 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
15 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.010G091500 pentatricopeptide, putative, expressed -
17 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
18 Sobic.007G210801 - K10277: KDM8, lysine-specific demethylase 8
19 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase


Gene co-expression network
sample Sobic003G419800 Sobic003G419800 Sobic005G028300 Sobic005G028300 Sobic003G419800--Sobic005G028300 Sobic001G001200 Sobic001G001200 Sobic003G419800--Sobic001G001200 Sobic007G179600 Sobic007G179600 Sobic003G419800--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic003G419800--Sobic001G081300 Sobic003G051500 Sobic003G051500 Sobic003G419800--Sobic003G051500 Sobic001G391101 Sobic001G391101 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic010G083900 Sobic010G083900 Sobic005G028300--Sobic010G083900 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic001G001200--Sobic010G083900 Sobic007G179600--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic007G179600--Sobic001G347100 Sobic007G179600--Sobic003G419800 Sobic007G179600--Sobic001G391101 Sobic005G210700 Sobic005G210700 Sobic007G179600--Sobic005G210700 Sobic009G238700 Sobic009G238700 Sobic007G179600--Sobic009G238700 Sobic008G066900 Sobic008G066900 Sobic007G179600--Sobic008G066900 Sobic008G099900 Sobic008G099900 Sobic007G179600--Sobic008G099900 Sobic007G210801 Sobic007G210801 Sobic007G179600--Sobic007G210801 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic007G060600 Sobic007G060600 Sobic001G081300--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic004G241000 Sobic004G241000 Sobic001G391101--Sobic004G241000 Sobic001G390900--Sobic003G419800 Sobic001G390900--Sobic001G001200 Sobic001G390900--Sobic003G051500 Sobic001G390900--Sobic010G099300 Sobic001G390900--Sobic001G081300 Sobic001G390900--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic001G390900--Sobic001G322600 Sobic001G390900--Sobic005G028300 Sobic002G240900 Sobic002G240900 Sobic001G390900--Sobic002G240900 Sobic002G378100 Sobic002G378100 Sobic003G014700--Sobic002G378100 Sobic003G014700--Sobic005G028300 Sobic003G014700--Sobic010G083900 Sobic003G014700--Sobic001G322600 Sobic003G014700--Sobic001G391101 Sobic004G027500 Sobic004G027500 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G014700--Sobic003G419800 Sobic008G100400 Sobic008G100400 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100
Octagon: transcription factors


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