Gene annotation
Transcriptome id Sobic.002G240900.1
Synonym Sb02g027830
Functional annotation pentatricopeptide, putative, expressed
UniProt C5X3R6
Pfam PF13812 PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF897
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24000 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os10g30760.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a047393
Brachypodium PNT64803 , PNT64804
Barley HORVU5Hr1G071640.5 , HORVU5Hr1G071640.4 , HORVU5Hr1G071640.1 , HORVU5Hr1G071640.3
Wheat TraesCS5B02G255500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G149100 vegetative storage protein, putative, expressed -
2 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
3 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.003G014766 - -
5 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
6 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.001G390900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
10 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
11 Sobic.001G391101 - -
12 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
13 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.010G092801 - -
15 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.001G049800 DDT domain containing protein, putative, expressed -
17 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
18 Sobic.006G069100 pentatricopeptide, putative, expressed -
19 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
20 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic002G240900 Sobic002G240900 Sobic001G149100 Sobic001G149100 Sobic002G240900--Sobic001G149100 Sobic003G419800 Sobic003G419800 Sobic002G240900--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic002G240900--Sobic002G389200 Sobic003G014766 Sobic003G014766 Sobic002G240900--Sobic003G014766 Sobic005G059400 Sobic005G059400 Sobic002G240900--Sobic005G059400 Sobic003G051500 Sobic003G051500 Sobic002G240900--Sobic003G051500 Sobic001G001200 Sobic001G001200 Sobic002G240900--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic002G240900--Sobic005G028300 Sobic001G390900 Sobic001G390900 Sobic002G240900--Sobic001G390900 Sobic001G347100 Sobic001G347100 Sobic001G149100--Sobic001G347100 Sobic003G299200 Sobic003G299200 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic008G179000 Sobic008G179000 Sobic001G149100--Sobic008G179000 Sobic004G241000 Sobic004G241000 Sobic001G149100--Sobic004G241000 Sobic008G163400 Sobic008G163400 Sobic001G149100--Sobic008G163400 Sobic003G239000 Sobic003G239000 Sobic001G149100--Sobic003G239000 Sobic006G069100 Sobic006G069100 Sobic001G149100--Sobic006G069100 Sobic002G267600 Sobic002G267600 Sobic001G149100--Sobic002G267600 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic007G179600 Sobic007G179600 Sobic003G419800--Sobic007G179600 Sobic001G081300 Sobic001G081300 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic001G391101 Sobic001G391101 Sobic003G419800--Sobic001G391101 Sobic003G419800--Sobic001G390900 Sobic003G014700 Sobic003G014700 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600 Sobic002G389200--Sobic005G028300 Sobic009G155400 Sobic009G155400 Sobic002G389200--Sobic009G155400 Sobic002G389200--Sobic002G240900 Sobic002G389200--Sobic006G069100 Sobic006G085900 Sobic006G085900 Sobic002G389200--Sobic006G085900 Sobic002G389200--Sobic003G419800 Sobic002G251800 Sobic002G251800 Sobic002G389200--Sobic002G251800 Sobic005G011000 Sobic005G011000 Sobic002G389200--Sobic005G011000 Sobic002G389200--Sobic007G179600 Sobic003G014766--Sobic002G240900 Sobic001G334100 Sobic001G334100 Sobic003G014766--Sobic001G334100 Sobic006G109400 Sobic006G109400 Sobic003G014766--Sobic006G109400 Sobic006G208400 Sobic006G208400 Sobic003G014766--Sobic006G208400 Sobic010G032300 Sobic010G032300 Sobic003G014766--Sobic010G032300 Sobic003G009400 Sobic003G009400 Sobic003G014766--Sobic003G009400 Sobic003G014766--Sobic005G059400 Sobic002G427300 Sobic002G427300 Sobic003G014766--Sobic002G427300 Sobic004G038100 Sobic004G038100 Sobic003G014766--Sobic004G038100 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic005G059400--Sobic001G347100 Sobic006G180700 Sobic006G180700 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic004G036700 Sobic004G036700 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400 Sobic003G051500--Sobic001G391101 Sobic003G051500--Sobic001G001200 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G051500--Sobic003G419800 Sobic003G051500--Sobic007G182600 Sobic010G099300 Sobic010G099300 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic001G001200--Sobic003G051500 Sobic001G001200--Sobic005G028300 Sobic001G001200--Sobic003G419800 Sobic001G001200--Sobic001G391101 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G001200--Sobic001G081300 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic005G028300--Sobic002G389200 Sobic005G028300--Sobic003G051500 Sobic005G028300--Sobic002G251800 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic001G390900--Sobic003G419800 Sobic001G390900--Sobic001G001200 Sobic001G390900--Sobic003G051500 Sobic001G390900--Sobic010G099300 Sobic001G390900--Sobic001G081300 Sobic001G390900--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic001G390900--Sobic001G322600 Sobic001G390900--Sobic005G028300 Sobic001G390900--Sobic002G240900
Octagon: transcription factors


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