Gene annotation
Transcriptome id Sobic.010G092801.1
Synonym -
Functional annotation -
UniProt A0A194YI52
Pfam PF02042 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF529
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62260 : mitochondrial editing factor 9
RAP-DB (Rice) LOC_Os06g12360.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a049465 , Zm00025a049464
Brachypodium -
Barley HORVU7Hr1G038340.11 , HORVU7Hr1G038340.10 , HORVU7Hr1G038340.1 , HORVU7Hr1G038340.3 , HORVU7Hr1G038340.2 , HORVU7Hr1G038340.5 , HORVU7Hr1G038340.4 , HORVU7Hr1G038340.7 , HORVU7Hr1G038340.6 , HORVU7Hr1G038340.9 , HORVU7Hr1G038340.8
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G183300 GTP binding protein, putative, expressed -
2 Sobic.002G240900 pentatricopeptide, putative, expressed -
3 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
4 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
5 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
6 Sobic.009G116400 pentatricopeptide, putative, expressed -
7 Sobic.003G299200 pentatricopeptide, putative, expressed -
8 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
9 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
11 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
13 Sobic.001G149100 vegetative storage protein, putative, expressed -
14 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G105600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
16 Sobic.009G238700 EMB2744, putative, expressed -
17 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
18 Sobic.002G389200 pentatricopeptide repeat domain containing protein, putative, expressed -
19 Sobic.003G352100 pentatricopeptide, putative, expressed -
20 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -


Gene co-expression network
sample Sobic010G092801 Sobic010G092801 Sobic002G183300 Sobic002G183300 Sobic010G092801--Sobic002G183300 Sobic002G240900 Sobic002G240900 Sobic010G092801--Sobic002G240900 Sobic004G227100 Sobic004G227100 Sobic010G092801--Sobic004G227100 Sobic005G011000 Sobic005G011000 Sobic010G092801--Sobic005G011000 Sobic006G271900 Sobic006G271900 Sobic010G092801--Sobic006G271900 Sobic009G116400 Sobic009G116400 Sobic010G092801--Sobic009G116400 Sobic003G299200 Sobic003G299200 Sobic010G092801--Sobic003G299200 Sobic001G347100 Sobic001G347100 Sobic010G092801--Sobic001G347100 Sobic001G081300 Sobic001G081300 Sobic010G092801--Sobic001G081300 Sobic004G025100 Sobic004G025100 Sobic002G183300--Sobic004G025100 Sobic001G401400 Sobic001G401400 Sobic002G183300--Sobic001G401400 Sobic005G059400 Sobic005G059400 Sobic002G183300--Sobic005G059400 Sobic001G105600 Sobic001G105600 Sobic002G183300--Sobic001G105600 Sobic009G253400 Sobic009G253400 Sobic002G183300--Sobic009G253400 Sobic001G334100 Sobic001G334100 Sobic002G183300--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G183300--Sobic001G122200 Sobic001G204700 Sobic001G204700 Sobic002G183300--Sobic001G204700 Sobic008G000600 Sobic008G000600 Sobic002G183300--Sobic008G000600 Sobic001G149100 Sobic001G149100 Sobic002G240900--Sobic001G149100 Sobic003G419800 Sobic003G419800 Sobic002G240900--Sobic003G419800 Sobic002G389200 Sobic002G389200 Sobic002G240900--Sobic002G389200 Sobic003G014766 Sobic003G014766 Sobic002G240900--Sobic003G014766 Sobic002G240900--Sobic005G059400 Sobic003G051500 Sobic003G051500 Sobic002G240900--Sobic003G051500 Sobic001G001200 Sobic001G001200 Sobic002G240900--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic002G240900--Sobic005G028300 Sobic001G390900 Sobic001G390900 Sobic002G240900--Sobic001G390900 Sobic005G178700 Sobic005G178700 Sobic004G227100--Sobic005G178700 Sobic008G056900 Sobic008G056900 Sobic004G227100--Sobic008G056900 Sobic004G227100--Sobic006G271900 Sobic007G185600 Sobic007G185600 Sobic004G227100--Sobic007G185600 Sobic004G226900 Sobic004G226900 Sobic004G227100--Sobic004G226900 Sobic010G015700 Sobic010G015700 Sobic004G227100--Sobic010G015700 Sobic004G077000 Sobic004G077000 Sobic004G227100--Sobic004G077000 Sobic002G399200 Sobic002G399200 Sobic004G227100--Sobic002G399200 Sobic004G036700 Sobic004G036700 Sobic004G227100--Sobic004G036700 Sobic005G011000--Sobic006G271900 Sobic005G011000--Sobic009G116400 Sobic005G011000--Sobic004G036700 Sobic005G011000--Sobic001G347100 Sobic005G210700 Sobic005G210700 Sobic005G011000--Sobic005G210700 Sobic001G187800 Sobic001G187800 Sobic005G011000--Sobic001G187800 Sobic005G011000--Sobic003G419800 Sobic005G011000--Sobic002G389200 Sobic005G011000--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic006G271900--Sobic005G028300 Sobic006G271900--Sobic001G081300 Sobic009G155400 Sobic009G155400 Sobic009G116400--Sobic009G155400 Sobic006G262700 Sobic006G262700 Sobic009G116400--Sobic006G262700 Sobic008G163400 Sobic008G163400 Sobic009G116400--Sobic008G163400 Sobic010G190900 Sobic010G190900 Sobic009G116400--Sobic010G190900 Sobic007G087900 Sobic007G087900 Sobic009G116400--Sobic007G087900 Sobic006G069100 Sobic006G069100 Sobic009G116400--Sobic006G069100 Sobic009G116400--Sobic005G210700 Sobic004G346200 Sobic004G346200 Sobic009G116400--Sobic004G346200 Sobic004G241000 Sobic004G241000 Sobic009G116400--Sobic004G241000 Sobic003G299200--Sobic001G149100 Sobic003G299200--Sobic001G347100 Sobic003G299200--Sobic001G081300 Sobic003G299200--Sobic001G401400 Sobic009G238700 Sobic009G238700 Sobic003G299200--Sobic009G238700 Sobic003G299200--Sobic008G163400 Sobic002G267600 Sobic002G267600 Sobic003G299200--Sobic002G267600 Sobic003G299200--Sobic003G051500 Sobic003G299200--Sobic001G040600 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G347100--Sobic001G081300 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic001G347100--Sobic003G299200 Sobic001G347100--Sobic004G241000 Sobic001G347100--Sobic006G069100 Sobic001G347100--Sobic009G155400 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic010G099300 Sobic010G099300 Sobic001G081300--Sobic010G099300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.