Gene annotation
Transcriptome id Sobic.001G200600.1
Synonym Sb01g017690
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QJX2
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF361
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55630 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g36190.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a006389
Brachypodium KQJ97369
Barley HORVU1Hr1G046560.2 , HORVU1Hr1G046560.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G250100 pentatricopeptide, putative, expressed -
2 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.003G433600 pentatricopeptide, putative, expressed -
4 Sobic.007G179500 - -
5 Sobic.010G092801 - -
6 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G490700 pentatricopeptide, putative, expressed -
8 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.008G041000 expressed protein -
10 Sobic.002G385200 pentatricopeptide, putative, expressed -
11 Sobic.008G178200 NBS-LRR disease resistance protein, putative, expressed -
12 Sobic.003G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.008G009300 pentatricopeptide, putative, expressed -
14 Sobic.002G292400 - -
15 Sobic.008G178300 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.001G179560 - -
17 Sobic.006G099501 - -
18 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
19 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
20 Sobic.007G013200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G200600 Sobic001G200600 Sobic004G250100 Sobic004G250100 Sobic001G200600--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic001G200600--Sobic009G042500 Sobic003G433600 Sobic003G433600 Sobic001G200600--Sobic003G433600 Sobic007G179500 Sobic007G179500 Sobic001G200600--Sobic007G179500 Sobic010G092801 Sobic010G092801 Sobic001G200600--Sobic010G092801 Sobic003G203100 Sobic003G203100 Sobic001G200600--Sobic003G203100 Sobic001G490700 Sobic001G490700 Sobic001G200600--Sobic001G490700 Sobic010G067000 Sobic010G067000 Sobic001G200600--Sobic010G067000 Sobic008G041000 Sobic008G041000 Sobic001G200600--Sobic008G041000 Sobic004G250100--Sobic007G179500 Sobic004G250100--Sobic003G433600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic003G202700 Sobic003G202700 Sobic009G042500--Sobic003G202700 Sobic009G042500--Sobic001G200600 Sobic009G042500--Sobic003G433600 Sobic006G266000 Sobic006G266000 Sobic009G042500--Sobic006G266000 Sobic001G226200 Sobic001G226200 Sobic009G042500--Sobic001G226200 Sobic009G042500--Sobic010G067000 Sobic009G042500--Sobic004G250100 Sobic010G066900 Sobic010G066900 Sobic009G042500--Sobic010G066900 Sobic002G292400 Sobic002G292400 Sobic009G042500--Sobic002G292400 Sobic003G433600--Sobic004G250100 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic007G179500--Sobic004G250100 Sobic007G179500--Sobic001G200600 Sobic007G179500--Sobic001G490700 Sobic007G179500--Sobic002G385200 Sobic007G179500--Sobic008G178300 Sobic008G013900 Sobic008G013900 Sobic007G179500--Sobic008G013900 Sobic006G271900 Sobic006G271900 Sobic007G179500--Sobic006G271900 Sobic003G219000 Sobic003G219000 Sobic007G179500--Sobic003G219000 Sobic001G182300 Sobic001G182300 Sobic007G179500--Sobic001G182300 Sobic002G183300 Sobic002G183300 Sobic010G092801--Sobic002G183300 Sobic002G240900 Sobic002G240900 Sobic010G092801--Sobic002G240900 Sobic004G227100 Sobic004G227100 Sobic010G092801--Sobic004G227100 Sobic005G011000 Sobic005G011000 Sobic010G092801--Sobic005G011000 Sobic010G092801--Sobic006G271900 Sobic009G116400 Sobic009G116400 Sobic010G092801--Sobic009G116400 Sobic003G299200 Sobic003G299200 Sobic010G092801--Sobic003G299200 Sobic001G347100 Sobic001G347100 Sobic010G092801--Sobic001G347100 Sobic001G081300 Sobic001G081300 Sobic010G092801--Sobic001G081300 Sobic010G232700 Sobic010G232700 Sobic003G203100--Sobic010G232700 Sobic003G203100--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic003G203100--Sobic006G085900 Sobic002G084400 Sobic002G084400 Sobic003G203100--Sobic002G084400 Sobic008G009300 Sobic008G009300 Sobic003G203100--Sobic008G009300 Sobic002G389200 Sobic002G389200 Sobic003G203100--Sobic002G389200 Sobic003G203100--Sobic001G490700 Sobic002G167400 Sobic002G167400 Sobic003G203100--Sobic002G167400 Sobic005G210700 Sobic005G210700 Sobic003G203100--Sobic005G210700 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic001G490700--Sobic008G178300 Sobic001G490700--Sobic004G250100 Sobic001G490700--Sobic007G179500 Sobic001G490700--Sobic003G433600 Sobic001G490700--Sobic003G203100 Sobic006G197500 Sobic006G197500 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300 Sobic010G067000--Sobic001G200600 Sobic010G067000--Sobic003G433600 Sobic010G067000--Sobic008G009300 Sobic010G067000--Sobic007G179500 Sobic010G067000--Sobic004G250100 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic008G041000--Sobic002G084400 Sobic008G041000--Sobic010G232700 Sobic008G041000--Sobic006G085900 Sobic008G041000--Sobic003G203100 Sobic005G028300 Sobic005G028300 Sobic008G041000--Sobic005G028300 Sobic002G251800 Sobic002G251800 Sobic008G041000--Sobic002G251800 Sobic008G041000--Sobic002G389200 Sobic009G134400 Sobic009G134400 Sobic008G041000--Sobic009G134400 Sobic006G069100 Sobic006G069100 Sobic008G041000--Sobic006G069100
Octagon: transcription factors


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