Gene annotation
Transcriptome id Sobic.004G250100.1
Synonym Sb04g028970
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XZC8
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF911
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22690 : -
RAP-DB (Rice) LOC_Os02g49830.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a021915
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G179500 - -
2 Sobic.003G433600 pentatricopeptide, putative, expressed -
3 Sobic.001G200600 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,4-alpha-glucan-branching enzyme, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
5 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G490700 pentatricopeptide, putative, expressed -
7 Sobic.008G178300 NBS-LRR disease resistance protein, putative, expressed -
8 Sobic.002G385200 pentatricopeptide, putative, expressed -
9 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
10 Sobic.001G412200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.002G407800 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
13 Sobic.009G136200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.004G046001 - -
15 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.008G178200 NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.004G315100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
18 Sobic.001G182300 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G250100 Sobic004G250100 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic003G213800 Sobic003G213800 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic001G490700 Sobic001G490700 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic001G527600 Sobic001G527600 Sobic004G250100--Sobic001G527600 Sobic007G179500--Sobic004G250100 Sobic007G179500--Sobic001G200600 Sobic007G179500--Sobic001G490700 Sobic007G179500--Sobic002G385200 Sobic007G179500--Sobic008G178300 Sobic008G013900 Sobic008G013900 Sobic007G179500--Sobic008G013900 Sobic006G271900 Sobic006G271900 Sobic007G179500--Sobic006G271900 Sobic003G219000 Sobic003G219000 Sobic007G179500--Sobic003G219000 Sobic001G182300 Sobic001G182300 Sobic007G179500--Sobic001G182300 Sobic003G433600--Sobic004G250100 Sobic003G202700 Sobic003G202700 Sobic003G433600--Sobic003G202700 Sobic003G433600--Sobic001G200600 Sobic007G013200 Sobic007G013200 Sobic003G433600--Sobic007G013200 Sobic003G433600--Sobic001G490700 Sobic003G032301 Sobic003G032301 Sobic003G433600--Sobic003G032301 Sobic001G491500 Sobic001G491500 Sobic003G433600--Sobic001G491500 Sobic003G433600--Sobic008G178300 Sobic006G222901 Sobic006G222901 Sobic003G433600--Sobic006G222901 Sobic001G200600--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic001G200600--Sobic009G042500 Sobic001G200600--Sobic003G433600 Sobic001G200600--Sobic007G179500 Sobic010G092801 Sobic010G092801 Sobic001G200600--Sobic010G092801 Sobic003G203100 Sobic003G203100 Sobic001G200600--Sobic003G203100 Sobic001G200600--Sobic001G490700 Sobic010G067000 Sobic010G067000 Sobic001G200600--Sobic010G067000 Sobic008G041000 Sobic008G041000 Sobic001G200600--Sobic008G041000 Sobic003G345300 Sobic003G345300 Sobic003G213800--Sobic003G345300 Sobic003G213800--Sobic004G250100 Sobic003G213800--Sobic001G527600 Sobic001G284200 Sobic001G284200 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G214800 Sobic003G214800 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic007G131200 Sobic007G131200 Sobic010G143400--Sobic007G131200 Sobic009G197000 Sobic009G197000 Sobic010G143400--Sobic009G197000 Sobic002G128400 Sobic002G128400 Sobic010G143400--Sobic002G128400 Sobic010G143400--Sobic008G013900 Sobic009G162401 Sobic009G162401 Sobic010G143400--Sobic009G162401 Sobic010G270900 Sobic010G270900 Sobic010G143400--Sobic010G270900 Sobic001G246200 Sobic001G246200 Sobic010G143400--Sobic001G246200 Sobic004G315100 Sobic004G315100 Sobic010G143400--Sobic004G315100 Sobic006G099501 Sobic006G099501 Sobic010G143400--Sobic006G099501 Sobic008G178200 Sobic008G178200 Sobic001G490700--Sobic008G178200 Sobic001G490700--Sobic008G178300 Sobic001G490700--Sobic004G250100 Sobic001G490700--Sobic007G179500 Sobic001G490700--Sobic003G433600 Sobic001G490700--Sobic003G203100 Sobic006G197500 Sobic006G197500 Sobic001G490700--Sobic006G197500 Sobic005G108300 Sobic005G108300 Sobic001G490700--Sobic005G108300 Sobic004G033300 Sobic004G033300 Sobic001G490700--Sobic004G033300 Sobic008G178300--Sobic008G178200 Sobic009G237350 Sobic009G237350 Sobic008G178300--Sobic009G237350 Sobic002G284600 Sobic002G284600 Sobic008G178300--Sobic002G284600 Sobic008G178300--Sobic001G490700 Sobic008G178300--Sobic004G250100 Sobic005G094001 Sobic005G094001 Sobic008G178300--Sobic005G094001 Sobic008G178300--Sobic003G433600 Sobic008G178300--Sobic003G202700 Sobic008G178300--Sobic007G179500 Sobic005G210700 Sobic005G210700 Sobic002G385200--Sobic005G210700 Sobic005G148500 Sobic005G148500 Sobic002G385200--Sobic005G148500 Sobic002G385200--Sobic001G182300 Sobic005G148400 Sobic005G148400 Sobic002G385200--Sobic005G148400 Sobic002G385200--Sobic006G099501 Sobic001G001200 Sobic001G001200 Sobic002G385200--Sobic001G001200 Sobic008G066900 Sobic008G066900 Sobic002G385200--Sobic008G066900 Sobic007G179600 Sobic007G179600 Sobic002G385200--Sobic007G179600 Sobic002G385200--Sobic010G143400 Sobic001G527600--Sobic003G213800 Sobic001G527600--Sobic004G250100 Sobic001G527600--Sobic003G203100 Sobic004G255300 Sobic004G255300 Sobic001G527600--Sobic004G255300 Sobic004G312000 Sobic004G312000 Sobic001G527600--Sobic004G312000 Sobic001G527600--Sobic003G433600 Sobic009G136200 Sobic009G136200 Sobic001G527600--Sobic009G136200 Sobic002G407800 Sobic002G407800 Sobic001G527600--Sobic002G407800 Sobic004G046001 Sobic004G046001 Sobic001G527600--Sobic004G046001
Octagon: transcription factors


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