Gene annotation
Transcriptome id Sobic.003G213800.2
Synonym Sb03g027310, BE1, EMB2729
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
1,4-alpha-glucan-branching enzyme, putative, expressed
UniProt C5XQC4
Pfam PF02922 PF00128 PF02806
Panther DB PTHR10357 PTHR10357:SF119
NCBI CDD -
KEGG Orthology K00700; GBE1, 1,4-alpha-glucan branching enzyme
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G20440 : Alpha amylase family protein
RAP-DB (Rice) LOC_Os06g26234.2 : 1,4-alpha-glucan-branching enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a038467
Brachypodium KQK18365 , KQK18367 , KQK18366 , KQK18354
Barley HORVU7Hr1G082830.6 , HORVU7Hr1G082830.7 , HORVU7Hr1G082830.4 , HORVU7Hr1G082830.5 , HORVU7Hr1G082830.2 , HORVU7Hr1G082830.3 , HORVU7Hr1G082830.1 , HORVU7Hr1G082830.8 , HORVU7Hr1G082830.9 , HORVU7Hr1G082830.18 , HORVU7Hr1G082830.19 , HORVU7Hr1G082830.14 , HORVU7Hr1G082830.15 , HORVU7Hr1G082830.16 , HORVU7Hr1G082830.17 , HORVU7Hr1G082830.10 , HORVU7Hr1G082830.11 , HORVU7Hr1G082830.12 , HORVU7Hr1G082830.13 , HORVU7Hr1G082830.21 , HORVU7Hr1G082830.20 , HORVU7Hr1G082830.23 , HORVU7Hr1G082830.22
Wheat TraesCS7A02G336400 , TraesCS7D02G344000 , TraesCS7B02G248000 , TraesCS7B02G248000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G345300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G250100 pentatricopeptide, putative, expressed -
3 Sobic.001G527600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@radical SAM enzyme, putative, expressed K02495: hemN, oxygen-independent coproporphyrinogen III oxidase
4 Sobic.001G284200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CS domain containing protein, putative, expressed -
5 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
6 Sobic.001G228300 SAP domain containing protein, expressed -
7 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -
8 Sobic.003G214800 pentatricopeptide, putative, expressed -
9 Sobic.005G142900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.007G179500 - -
11 Sobic.004G255300 pentatricopeptide, putative, expressed -
12 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
13 Sobic.003G433600 pentatricopeptide, putative, expressed -
14 Sobic.002G407800 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
15 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
17 Sobic.004G046001 - -
18 Sobic.001G138000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamine biosynthesis protein thiC, putative, expressed K03147: phosphomethylpyrimidine synthase
19 Sobic.001G490700 pentatricopeptide, putative, expressed -
20 Sobic.003G404400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized RNA methyltransferase pc1998, putative, expressed -


Gene co-expression network
sample Sobic003G213800 Sobic003G213800 Sobic003G345300 Sobic003G345300 Sobic003G213800--Sobic003G345300 Sobic004G250100 Sobic004G250100 Sobic003G213800--Sobic004G250100 Sobic001G527600 Sobic001G527600 Sobic003G213800--Sobic001G527600 Sobic001G284200 Sobic001G284200 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G214800 Sobic003G214800 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic003G345300--Sobic003G214800 Sobic003G345300--Sobic003G213800 Sobic004G235100 Sobic004G235100 Sobic003G345300--Sobic004G235100 Sobic003G345300--Sobic001G284200 Sobic004G342500 Sobic004G342500 Sobic003G345300--Sobic004G342500 Sobic008G142400 Sobic008G142400 Sobic003G345300--Sobic008G142400 Sobic004G289300 Sobic004G289300 Sobic003G345300--Sobic004G289300 Sobic003G310800 Sobic003G310800 Sobic003G345300--Sobic003G310800 Sobic004G335900 Sobic004G335900 Sobic003G345300--Sobic004G335900 Sobic007G179500 Sobic007G179500 Sobic004G250100--Sobic007G179500 Sobic003G433600 Sobic003G433600 Sobic004G250100--Sobic003G433600 Sobic001G200600 Sobic001G200600 Sobic004G250100--Sobic001G200600 Sobic004G250100--Sobic003G213800 Sobic010G143400 Sobic010G143400 Sobic004G250100--Sobic010G143400 Sobic001G490700 Sobic001G490700 Sobic004G250100--Sobic001G490700 Sobic008G178300 Sobic008G178300 Sobic004G250100--Sobic008G178300 Sobic002G385200 Sobic002G385200 Sobic004G250100--Sobic002G385200 Sobic004G250100--Sobic001G527600 Sobic001G527600--Sobic003G213800 Sobic001G527600--Sobic004G250100 Sobic003G203100 Sobic003G203100 Sobic001G527600--Sobic003G203100 Sobic004G255300 Sobic004G255300 Sobic001G527600--Sobic004G255300 Sobic004G312000 Sobic004G312000 Sobic001G527600--Sobic004G312000 Sobic001G527600--Sobic003G433600 Sobic009G136200 Sobic009G136200 Sobic001G527600--Sobic009G136200 Sobic002G407800 Sobic002G407800 Sobic001G527600--Sobic002G407800 Sobic004G046001 Sobic004G046001 Sobic001G527600--Sobic004G046001 Sobic004G253800 Sobic004G253800 Sobic001G284200--Sobic004G253800 Sobic006G114300 Sobic006G114300 Sobic001G284200--Sobic006G114300 Sobic003G157500 Sobic003G157500 Sobic001G284200--Sobic003G157500 Sobic001G484300 Sobic001G484300 Sobic001G284200--Sobic001G484300 Sobic005G020200 Sobic005G020200 Sobic001G284200--Sobic005G020200 Sobic001G188600 Sobic001G188600 Sobic001G284200--Sobic001G188600 Sobic005G200600 Sobic005G200600 Sobic001G284200--Sobic005G200600 Sobic001G357200 Sobic001G357200 Sobic001G284200--Sobic001G357200 Sobic001G120000 Sobic001G120000 Sobic001G284200--Sobic001G120000 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic001G437801--Sobic001G040600 Sobic001G395300 Sobic001G395300 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G437801--Sobic001G228300 Sobic001G049800 Sobic001G049800 Sobic001G437801--Sobic001G049800 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G228300--Sobic001G138000 Sobic006G263800 Sobic006G263800 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic007G116100 Sobic007G116100 Sobic001G228300--Sobic007G116100 Sobic002G140000 Sobic002G140000 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic008G153200--Sobic002G045700 Sobic008G153200--Sobic007G116100 Sobic008G153200--Sobic001G228300 Sobic007G155600 Sobic007G155600 Sobic008G153200--Sobic007G155600 Sobic009G251000 Sobic009G251000 Sobic008G153200--Sobic009G251000 Sobic002G158800 Sobic002G158800 Sobic008G153200--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic008G153200--Sobic004G338300 Sobic004G342100 Sobic004G342100 Sobic008G153200--Sobic004G342100 Sobic007G015300 Sobic007G015300 Sobic008G153200--Sobic007G015300 Sobic010G279100 Sobic010G279100 Sobic003G214800--Sobic010G279100 Sobic001G372600 Sobic001G372600 Sobic003G214800--Sobic001G372600 Sobic003G214800--Sobic003G310800 Sobic003G214800--Sobic003G345300 Sobic003G214800--Sobic004G289300 Sobic003G214800--Sobic001G484300 Sobic002G341500 Sobic002G341500 Sobic003G214800--Sobic002G341500 Sobic003G214800--Sobic001G284200 Sobic003G214800--Sobic004G342500 Sobic005G142900--Sobic001G228300 Sobic001G275800 Sobic001G275800 Sobic005G142900--Sobic001G275800 Sobic001G061600 Sobic001G061600 Sobic005G142900--Sobic001G061600 Sobic005G142900--Sobic003G283100 Sobic001G164200 Sobic001G164200 Sobic005G142900--Sobic001G164200 Sobic005G142900--Sobic001G138000 Sobic005G142900--Sobic007G182600 Sobic005G218100 Sobic005G218100 Sobic005G142900--Sobic005G218100 Sobic001G182300 Sobic001G182300 Sobic005G142900--Sobic001G182300
Octagon: transcription factors


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