Gene annotation
Transcriptome id Sobic.003G214800.1
Synonym Sb03g027395, CRR21
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q4J7
Pfam PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF777
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55740 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g42280.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a038474
Brachypodium PNT72367
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279100 expressed protein -
2 Sobic.001G372600 DVR, putative, expressed K19073: divinyl chlorophyllide a 8-vinyl-reductase
3 Sobic.003G310800 expressed protein -
4 Sobic.003G345300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G289300 expressed protein -
6 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
7 Sobic.002G341500 rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed -
8 Sobic.001G284200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CS domain containing protein, putative, expressed -
9 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
10 Sobic.001G088700 DCL, chloroplast precursor, putative, expressed -
11 Sobic.001G455500 pentatricopeptide repeat domain containing protein, putative, expressed -
12 Sobic.002G199000 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed K00592: [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase
13 Sobic.004G235100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.001G058600 BT1 family protein, putative, expressed -
15 Sobic.009G187100 expressed protein -
16 Sobic.008G142400 cycloartenol synthase, putative, expressed -
17 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.010G004800 expressed protein -
19 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -
20 Sobic.006G248200 - -


Gene co-expression network
sample Sobic003G214800 Sobic003G214800 Sobic010G279100 Sobic010G279100 Sobic003G214800--Sobic010G279100 Sobic001G372600 Sobic001G372600 Sobic003G214800--Sobic001G372600 Sobic003G310800 Sobic003G310800 Sobic003G214800--Sobic003G310800 Sobic003G345300 Sobic003G345300 Sobic003G214800--Sobic003G345300 Sobic004G289300 Sobic004G289300 Sobic003G214800--Sobic004G289300 Sobic001G484300 Sobic001G484300 Sobic003G214800--Sobic001G484300 Sobic002G341500 Sobic002G341500 Sobic003G214800--Sobic002G341500 Sobic001G284200 Sobic001G284200 Sobic003G214800--Sobic001G284200 Sobic004G342500 Sobic004G342500 Sobic003G214800--Sobic004G342500 Sobic010G279100--Sobic003G214800 Sobic002G199000 Sobic002G199000 Sobic010G279100--Sobic002G199000 Sobic001G455500 Sobic001G455500 Sobic010G279100--Sobic001G455500 Sobic006G204600 Sobic006G204600 Sobic010G279100--Sobic006G204600 Sobic001G058600 Sobic001G058600 Sobic010G279100--Sobic001G058600 Sobic010G279100--Sobic003G310800 Sobic003G439000 Sobic003G439000 Sobic010G279100--Sobic003G439000 Sobic010G279100--Sobic004G342500 Sobic004G357300 Sobic004G357300 Sobic010G279100--Sobic004G357300 Sobic001G372600--Sobic002G341500 Sobic001G017000 Sobic001G017000 Sobic001G372600--Sobic001G017000 Sobic001G372600--Sobic001G484300 Sobic001G372600--Sobic003G214800 Sobic008G112300 Sobic008G112300 Sobic001G372600--Sobic008G112300 Sobic003G058600 Sobic003G058600 Sobic001G372600--Sobic003G058600 Sobic004G076000 Sobic004G076000 Sobic001G372600--Sobic004G076000 Sobic003G328200 Sobic003G328200 Sobic001G372600--Sobic003G328200 Sobic010G255600 Sobic010G255600 Sobic001G372600--Sobic010G255600 Sobic003G310800--Sobic010G279100 Sobic003G310800--Sobic003G214800 Sobic001G186200 Sobic001G186200 Sobic003G310800--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic003G310800--Sobic001G006000 Sobic003G310800--Sobic001G455500 Sobic002G038300 Sobic002G038300 Sobic003G310800--Sobic002G038300 Sobic010G028000 Sobic010G028000 Sobic003G310800--Sobic010G028000 Sobic003G245800 Sobic003G245800 Sobic003G310800--Sobic003G245800 Sobic001G388400 Sobic001G388400 Sobic003G310800--Sobic001G388400 Sobic003G345300--Sobic003G214800 Sobic003G213800 Sobic003G213800 Sobic003G345300--Sobic003G213800 Sobic004G235100 Sobic004G235100 Sobic003G345300--Sobic004G235100 Sobic003G345300--Sobic001G284200 Sobic003G345300--Sobic004G342500 Sobic008G142400 Sobic008G142400 Sobic003G345300--Sobic008G142400 Sobic003G345300--Sobic004G289300 Sobic003G345300--Sobic003G310800 Sobic004G335900 Sobic004G335900 Sobic003G345300--Sobic004G335900 Sobic004G289300--Sobic003G214800 Sobic010G162500 Sobic010G162500 Sobic004G289300--Sobic010G162500 Sobic006G122500 Sobic006G122500 Sobic004G289300--Sobic006G122500 Sobic005G191500 Sobic005G191500 Sobic004G289300--Sobic005G191500 Sobic004G289300--Sobic003G310800 Sobic010G006300 Sobic010G006300 Sobic004G289300--Sobic010G006300 Sobic010G161201 Sobic010G161201 Sobic004G289300--Sobic010G161201 Sobic004G289300--Sobic010G279100 Sobic001G252401 Sobic001G252401 Sobic004G289300--Sobic001G252401 Sobic010G233800 Sobic010G233800 Sobic001G484300--Sobic010G233800 Sobic001G484300--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic001G484300--Sobic001G076500 Sobic001G453300 Sobic001G453300 Sobic001G484300--Sobic001G453300 Sobic003G246400 Sobic003G246400 Sobic001G484300--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G484300--Sobic001G027600 Sobic004G317900 Sobic004G317900 Sobic001G484300--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic001G484300--Sobic001G427000 Sobic007G185100 Sobic007G185100 Sobic001G484300--Sobic007G185100 Sobic004G311100 Sobic004G311100 Sobic002G341500--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic002G341500--Sobic003G386300 Sobic007G143700 Sobic007G143700 Sobic002G341500--Sobic007G143700 Sobic002G271700 Sobic002G271700 Sobic002G341500--Sobic002G271700 Sobic001G531200 Sobic001G531200 Sobic002G341500--Sobic001G531200 Sobic004G335800 Sobic004G335800 Sobic002G341500--Sobic004G335800 Sobic001G122400 Sobic001G122400 Sobic002G341500--Sobic001G122400 Sobic002G341500--Sobic008G112300 Sobic001G527100 Sobic001G527100 Sobic002G341500--Sobic001G527100 Sobic004G253800 Sobic004G253800 Sobic001G284200--Sobic004G253800 Sobic006G114300 Sobic006G114300 Sobic001G284200--Sobic006G114300 Sobic003G157500 Sobic003G157500 Sobic001G284200--Sobic003G157500 Sobic001G284200--Sobic001G484300 Sobic005G020200 Sobic005G020200 Sobic001G284200--Sobic005G020200 Sobic001G188600 Sobic001G188600 Sobic001G284200--Sobic001G188600 Sobic005G200600 Sobic005G200600 Sobic001G284200--Sobic005G200600 Sobic001G357200 Sobic001G357200 Sobic001G284200--Sobic001G357200 Sobic001G120000 Sobic001G120000 Sobic001G284200--Sobic001G120000 Sobic004G342500--Sobic006G204600 Sobic004G342500--Sobic010G279100 Sobic004G342500--Sobic002G199000 Sobic001G410700 Sobic001G410700 Sobic004G342500--Sobic001G410700 Sobic004G342500--Sobic004G235100 Sobic004G342500--Sobic003G214800 Sobic004G342500--Sobic001G455500 Sobic006G049200 Sobic006G049200 Sobic004G342500--Sobic006G049200 Sobic004G342500--Sobic006G122500
Octagon: transcription factors


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