Gene annotation
Transcriptome id Sobic.003G345300.1
Synonym Sb03g038900
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XP06
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF551
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39980 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g61630.1 : expressed protein
MaizeGDB (Corn) Zm00025a026992
Brachypodium KQK10434
Barley HORVU3Hr1G087540.1 , HORVU3Hr1G087540.2
Wheat TraesCS5D02G489713
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G214800 pentatricopeptide, putative, expressed -
2 Sobic.003G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,4-alpha-glucan-branching enzyme, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
3 Sobic.004G235100 PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G284200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CS domain containing protein, putative, expressed -
5 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
6 Sobic.008G142400 cycloartenol synthase, putative, expressed -
7 Sobic.004G289300 expressed protein -
8 Sobic.003G310800 expressed protein -
9 Sobic.004G335900 expressed protein -
10 Sobic.010G004800 expressed protein -
11 Sobic.001G513000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.006G049200 violaxanthin de-epoxidase, putative, expressed K09839: VDE, violaxanthin de-epoxidase
13 Sobic.001G372600 DVR, putative, expressed K19073: divinyl chlorophyllide a 8-vinyl-reductase
14 Sobic.001G531800 dihydrodipicolinate reductase, putative, expressed K16908: chloroplast NAD(P)H dehydrogenase
15 Sobic.006G265300 endonuclease, putative, expressed -
16 Sobic.010G279100 expressed protein -
17 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
18 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
19 Sobic.007G018900 RNA recognition motif containing protein, putative, expressed -
20 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -


Gene co-expression network
sample Sobic003G345300 Sobic003G345300 Sobic003G214800 Sobic003G214800 Sobic003G345300--Sobic003G214800 Sobic003G213800 Sobic003G213800 Sobic003G345300--Sobic003G213800 Sobic004G235100 Sobic004G235100 Sobic003G345300--Sobic004G235100 Sobic001G284200 Sobic001G284200 Sobic003G345300--Sobic001G284200 Sobic004G342500 Sobic004G342500 Sobic003G345300--Sobic004G342500 Sobic008G142400 Sobic008G142400 Sobic003G345300--Sobic008G142400 Sobic004G289300 Sobic004G289300 Sobic003G345300--Sobic004G289300 Sobic003G310800 Sobic003G310800 Sobic003G345300--Sobic003G310800 Sobic004G335900 Sobic004G335900 Sobic003G345300--Sobic004G335900 Sobic010G279100 Sobic010G279100 Sobic003G214800--Sobic010G279100 Sobic001G372600 Sobic001G372600 Sobic003G214800--Sobic001G372600 Sobic003G214800--Sobic003G310800 Sobic003G214800--Sobic003G345300 Sobic003G214800--Sobic004G289300 Sobic001G484300 Sobic001G484300 Sobic003G214800--Sobic001G484300 Sobic002G341500 Sobic002G341500 Sobic003G214800--Sobic002G341500 Sobic003G214800--Sobic001G284200 Sobic003G214800--Sobic004G342500 Sobic003G213800--Sobic003G345300 Sobic004G250100 Sobic004G250100 Sobic003G213800--Sobic004G250100 Sobic001G527600 Sobic001G527600 Sobic003G213800--Sobic001G527600 Sobic003G213800--Sobic001G284200 Sobic001G437801 Sobic001G437801 Sobic003G213800--Sobic001G437801 Sobic001G228300 Sobic001G228300 Sobic003G213800--Sobic001G228300 Sobic008G153200 Sobic008G153200 Sobic003G213800--Sobic008G153200 Sobic003G213800--Sobic003G214800 Sobic005G142900 Sobic005G142900 Sobic003G213800--Sobic005G142900 Sobic007G018900 Sobic007G018900 Sobic004G235100--Sobic007G018900 Sobic009G191900 Sobic009G191900 Sobic004G235100--Sobic009G191900 Sobic006G049200 Sobic006G049200 Sobic004G235100--Sobic006G049200 Sobic004G235100--Sobic008G142400 Sobic001G531800 Sobic001G531800 Sobic004G235100--Sobic001G531800 Sobic004G235100--Sobic004G342500 Sobic005G110433 Sobic005G110433 Sobic004G235100--Sobic005G110433 Sobic007G122400 Sobic007G122400 Sobic004G235100--Sobic007G122400 Sobic009G210800 Sobic009G210800 Sobic004G235100--Sobic009G210800 Sobic004G253800 Sobic004G253800 Sobic001G284200--Sobic004G253800 Sobic006G114300 Sobic006G114300 Sobic001G284200--Sobic006G114300 Sobic003G157500 Sobic003G157500 Sobic001G284200--Sobic003G157500 Sobic001G284200--Sobic001G484300 Sobic005G020200 Sobic005G020200 Sobic001G284200--Sobic005G020200 Sobic001G188600 Sobic001G188600 Sobic001G284200--Sobic001G188600 Sobic005G200600 Sobic005G200600 Sobic001G284200--Sobic005G200600 Sobic001G357200 Sobic001G357200 Sobic001G284200--Sobic001G357200 Sobic001G120000 Sobic001G120000 Sobic001G284200--Sobic001G120000 Sobic006G204600 Sobic006G204600 Sobic004G342500--Sobic006G204600 Sobic004G342500--Sobic010G279100 Sobic002G199000 Sobic002G199000 Sobic004G342500--Sobic002G199000 Sobic001G410700 Sobic001G410700 Sobic004G342500--Sobic001G410700 Sobic004G342500--Sobic004G235100 Sobic004G342500--Sobic003G214800 Sobic001G455500 Sobic001G455500 Sobic004G342500--Sobic001G455500 Sobic004G342500--Sobic006G049200 Sobic006G122500 Sobic006G122500 Sobic004G342500--Sobic006G122500 Sobic002G311700 Sobic002G311700 Sobic008G142400--Sobic002G311700 Sobic002G052600 Sobic002G052600 Sobic008G142400--Sobic002G052600 Sobic008G142400--Sobic001G531800 Sobic008G142400--Sobic004G235100 Sobic008G142400--Sobic007G122400 Sobic006G253900 Sobic006G253900 Sobic008G142400--Sobic006G253900 Sobic005G029900 Sobic005G029900 Sobic008G142400--Sobic005G029900 Sobic008G142400--Sobic003G214800 Sobic009G196001 Sobic009G196001 Sobic008G142400--Sobic009G196001 Sobic004G289300--Sobic003G214800 Sobic010G162500 Sobic010G162500 Sobic004G289300--Sobic010G162500 Sobic004G289300--Sobic006G122500 Sobic005G191500 Sobic005G191500 Sobic004G289300--Sobic005G191500 Sobic004G289300--Sobic003G310800 Sobic010G006300 Sobic010G006300 Sobic004G289300--Sobic010G006300 Sobic010G161201 Sobic010G161201 Sobic004G289300--Sobic010G161201 Sobic004G289300--Sobic010G279100 Sobic001G252401 Sobic001G252401 Sobic004G289300--Sobic001G252401 Sobic003G310800--Sobic010G279100 Sobic003G310800--Sobic003G214800 Sobic001G186200 Sobic001G186200 Sobic003G310800--Sobic001G186200 Sobic001G006000 Sobic001G006000 Sobic003G310800--Sobic001G006000 Sobic003G310800--Sobic001G455500 Sobic002G038300 Sobic002G038300 Sobic003G310800--Sobic002G038300 Sobic010G028000 Sobic010G028000 Sobic003G310800--Sobic010G028000 Sobic003G245800 Sobic003G245800 Sobic003G310800--Sobic003G245800 Sobic001G388400 Sobic001G388400 Sobic003G310800--Sobic001G388400 Sobic004G335900--Sobic007G018900 Sobic004G335900--Sobic001G484300 Sobic006G076900 Sobic006G076900 Sobic004G335900--Sobic006G076900 Sobic001G073400 Sobic001G073400 Sobic004G335900--Sobic001G073400 Sobic004G335900--Sobic009G196001 Sobic010G233700 Sobic010G233700 Sobic004G335900--Sobic010G233700 Sobic002G406400 Sobic002G406400 Sobic004G335900--Sobic002G406400 Sobic004G335900--Sobic003G214800 Sobic009G205800 Sobic009G205800 Sobic004G335900--Sobic009G205800
Octagon: transcription factors


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