Gene annotation
Transcriptome id Sobic.008G142400.7,Sobic.008G142400.8,Sobic.008G142400.10,Sobic.008G142400.6,Sobic.008G142400.13,Sobic.008G142400.2,Sobic.008G142400.9,Sobic.008G142400.3,Sobic.008G142400.5,Sobic.008G142400.12,Sobic.008G142400.1,Sobic.008G142400.11,Sobic.008G142400.4
Synonym CAS1
Functional annotation cycloartenol synthase, putative, expressed
UniProt A0A1Z5R7J8 , A0A1Z5R6N2 , A0A1Z5R6S4 , A0A1Z5R6N0 , A0A1Z5R6S9 , A0A1Z5R6K7 , A0A1B6PE51 , A0A1B6PDR1 , A0A1B6PDV5 , A0A1Z5R6P1 , A0A1Z5R7K7 , A0A1Z5R7T4 , A0A1Z5R772
Pfam PF00432 PF13243 PF00432
Panther DB PTHR11764 PTHR11764:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G07050 : baruol synthase 1,cycloartenol synthase 1
RAP-DB (Rice) LOC_Os11g18194.1,LOC_Os11g35710.1,LOC_Os11g18366.3,LOC_Os02g04710.1 : cycloartenol synthase, putative, expressed
MaizeGDB (Corn) Zm00025a004369 , Zm00025a004370
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G311700 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.002G052600 - -
3 Sobic.001G531800 dihydrodipicolinate reductase, putative, expressed K16908: chloroplast NAD(P)H dehydrogenase
4 Sobic.004G235100 PPR repeat domain containing protein, putative, expressed -
5 Sobic.007G122400 HOTHEAD precursor, putative, expressed K15403: ACE, fatty acid omega-hydroxy dehydrogenase
6 Sobic.006G253900 absent or strongly suppressed during the accumulation of 3-deoxyanthocyanidins(PubMedID : 20529887)@naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed K00475: naringenin 3-dioxygenase
7 Sobic.005G029900 strictosidine synthase, putative, expressed -
8 Sobic.003G214800 pentatricopeptide, putative, expressed -
9 Sobic.009G196001 - -
10 Sobic.010G004800 expressed protein -
11 Sobic.004G342500 uncharacterized protein yqjG, putative, expressed K07393: ECM4, glutathionyl-hydroquinone reductase
12 Sobic.001G021601 - -
13 Sobic.007G018900 RNA recognition motif containing protein, putative, expressed -
14 Sobic.009G191900 expressed protein -
15 Sobic.010G001400 Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
16 Sobic.002G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.002G176300 RING finger protein, putative, expressed -
18 Sobic.001G372600 DVR, putative, expressed K19073: divinyl chlorophyllide a 8-vinyl-reductase
19 Sobic.003G345300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.007G069500 expressed protein -


Gene co-expression network
sample Sobic008G142400 Sobic008G142400 Sobic002G311700 Sobic002G311700 Sobic008G142400--Sobic002G311700 Sobic002G052600 Sobic002G052600 Sobic008G142400--Sobic002G052600 Sobic001G531800 Sobic001G531800 Sobic008G142400--Sobic001G531800 Sobic004G235100 Sobic004G235100 Sobic008G142400--Sobic004G235100 Sobic007G122400 Sobic007G122400 Sobic008G142400--Sobic007G122400 Sobic006G253900 Sobic006G253900 Sobic008G142400--Sobic006G253900 Sobic005G029900 Sobic005G029900 Sobic008G142400--Sobic005G029900 Sobic003G214800 Sobic003G214800 Sobic008G142400--Sobic003G214800 Sobic009G196001 Sobic009G196001 Sobic008G142400--Sobic009G196001 Sobic002G311700--Sobic008G142400 Sobic002G311700--Sobic006G253900 Sobic002G311700--Sobic009G196001 Sobic007G069500 Sobic007G069500 Sobic002G311700--Sobic007G069500 Sobic006G227000 Sobic006G227000 Sobic002G311700--Sobic006G227000 Sobic009G206000 Sobic009G206000 Sobic002G311700--Sobic009G206000 Sobic007G181000 Sobic007G181000 Sobic002G311700--Sobic007G181000 Sobic002G128600 Sobic002G128600 Sobic002G311700--Sobic002G128600 Sobic010G120200 Sobic010G120200 Sobic002G311700--Sobic010G120200 Sobic002G052600--Sobic008G142400 Sobic008G032701 Sobic008G032701 Sobic002G052600--Sobic008G032701 Sobic006G048000 Sobic006G048000 Sobic002G052600--Sobic006G048000 Sobic002G052600--Sobic001G531800 Sobic002G052600--Sobic006G253900 Sobic002G052600--Sobic007G181000 Sobic001G192100 Sobic001G192100 Sobic002G052600--Sobic001G192100 Sobic001G372600 Sobic001G372600 Sobic002G052600--Sobic001G372600 Sobic002G062000 Sobic002G062000 Sobic002G052600--Sobic002G062000 Sobic009G253450 Sobic009G253450 Sobic001G531800--Sobic009G253450 Sobic009G178000 Sobic009G178000 Sobic001G531800--Sobic009G178000 Sobic009G184450 Sobic009G184450 Sobic001G531800--Sobic009G184450 Sobic008G167900 Sobic008G167900 Sobic001G531800--Sobic008G167900 Sobic002G231700 Sobic002G231700 Sobic001G531800--Sobic002G231700 Sobic003G076300 Sobic003G076300 Sobic001G531800--Sobic003G076300 Sobic001G249000 Sobic001G249000 Sobic001G531800--Sobic001G249000 Sobic003G051300 Sobic003G051300 Sobic001G531800--Sobic003G051300 Sobic001G531800--Sobic008G142400 Sobic007G018900 Sobic007G018900 Sobic004G235100--Sobic007G018900 Sobic009G191900 Sobic009G191900 Sobic004G235100--Sobic009G191900 Sobic006G049200 Sobic006G049200 Sobic004G235100--Sobic006G049200 Sobic004G235100--Sobic008G142400 Sobic004G235100--Sobic001G531800 Sobic004G342500 Sobic004G342500 Sobic004G235100--Sobic004G342500 Sobic005G110433 Sobic005G110433 Sobic004G235100--Sobic005G110433 Sobic004G235100--Sobic007G122400 Sobic009G210800 Sobic009G210800 Sobic004G235100--Sobic009G210800 Sobic003G341900 Sobic003G341900 Sobic007G122400--Sobic003G341900 Sobic010G001400 Sobic010G001400 Sobic007G122400--Sobic010G001400 Sobic002G176700 Sobic002G176700 Sobic007G122400--Sobic002G176700 Sobic007G122400--Sobic009G191900 Sobic001G145550 Sobic001G145550 Sobic007G122400--Sobic001G145550 Sobic009G173700 Sobic009G173700 Sobic007G122400--Sobic009G173700 Sobic007G149500 Sobic007G149500 Sobic007G122400--Sobic007G149500 Sobic001G100300 Sobic001G100300 Sobic007G122400--Sobic001G100300 Sobic009G213150 Sobic009G213150 Sobic007G122400--Sobic009G213150 Sobic006G253900--Sobic006G227000 Sobic006G253900--Sobic007G069500 Sobic006G253900--Sobic002G128600 Sobic001G249600 Sobic001G249600 Sobic006G253900--Sobic001G249600 Sobic001G249500 Sobic001G249500 Sobic006G253900--Sobic001G249500 Sobic003G317800 Sobic003G317800 Sobic006G253900--Sobic003G317800 Sobic001G379300 Sobic001G379300 Sobic006G253900--Sobic001G379300 Sobic001G255300 Sobic001G255300 Sobic006G253900--Sobic001G255300 Sobic005G190800 Sobic005G190800 Sobic006G253900--Sobic005G190800 Sobic005G029900--Sobic008G142400 Sobic007G111500 Sobic007G111500 Sobic005G029900--Sobic007G111500 Sobic002G036300 Sobic002G036300 Sobic005G029900--Sobic002G036300 Sobic005G150501 Sobic005G150501 Sobic005G029900--Sobic005G150501 Sobic002G430100 Sobic002G430100 Sobic005G029900--Sobic002G430100 Sobic008G128800 Sobic008G128800 Sobic005G029900--Sobic008G128800 Sobic001G079000 Sobic001G079000 Sobic005G029900--Sobic001G079000 Sobic001G387700 Sobic001G387700 Sobic005G029900--Sobic001G387700 Sobic008G065700 Sobic008G065700 Sobic005G029900--Sobic008G065700 Sobic010G279100 Sobic010G279100 Sobic003G214800--Sobic010G279100 Sobic003G214800--Sobic001G372600 Sobic003G310800 Sobic003G310800 Sobic003G214800--Sobic003G310800 Sobic003G345300 Sobic003G345300 Sobic003G214800--Sobic003G345300 Sobic004G289300 Sobic004G289300 Sobic003G214800--Sobic004G289300 Sobic001G484300 Sobic001G484300 Sobic003G214800--Sobic001G484300 Sobic002G341500 Sobic002G341500 Sobic003G214800--Sobic002G341500 Sobic001G284200 Sobic001G284200 Sobic003G214800--Sobic001G284200 Sobic003G214800--Sobic004G342500 Sobic009G196001--Sobic002G311700 Sobic001G021601 Sobic001G021601 Sobic009G196001--Sobic001G021601 Sobic009G196001--Sobic008G142400 Sobic001G412400 Sobic001G412400 Sobic009G196001--Sobic001G412400 Sobic004G335900 Sobic004G335900 Sobic009G196001--Sobic004G335900 Sobic001G073400 Sobic001G073400 Sobic009G196001--Sobic001G073400 Sobic006G280400 Sobic006G280400 Sobic009G196001--Sobic006G280400 Sobic001G022200 Sobic001G022200 Sobic009G196001--Sobic001G022200 Sobic008G095150 Sobic008G095150 Sobic009G196001--Sobic008G095150
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.