Gene annotation
Transcriptome id Sobic.007G122400.1,Sobic.007G122400.2
Synonym HTH, Sb07g019920, EDA17
Functional annotation HOTHEAD precursor, putative, expressed
UniProt C5YKR5 , A0A1Z5R9F3
Pfam PF05199 PF00732
Panther DB PTHR11552 PTHR11552:SF104
NCBI CDD KOG1238; Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family)
KEGG Orthology K15403; ACE, fatty acid omega-hydroxy dehydrogenase
Gene Ontology GO:0016614; oxidoreductase activity, acting on CH-OH group of donors


Orthologs (automatic annotation)
TAIR AT1G72970 : Glucose-methanol-choline (GMC) oxidoreductase family protein
RAP-DB (Rice) LOC_Os08g31030.1 : HOTHEAD precursor, putative, expressed
MaizeGDB (Corn) Zm00025a006050
Brachypodium KQJ98177 , KQJ98176 , KQJ98175 , KQJ89995
Barley HORVU5Hr1G057590.5 , HORVU5Hr1G057590.4 , HORVU5Hr1G057590.7 , HORVU5Hr1G057590.6 , HORVU5Hr1G057590.3 , HORVU5Hr1G057590.2 , HORVU5Hr1G057590.9 , HORVU5Hr1G057590.8 , HORVU5Hr1G057590.10
Wheat TraesCS5D02G198700 , TraesCS3B02G206100 , TraesCS5A02G192300 , TraesCS3A02G178600 , TraesCS5B02G190800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G341900 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.010G001400 Transferase family protein (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
3 Sobic.002G176700 receptor-like protein kinase 2, putative, expressed -
4 Sobic.009G191900 expressed protein -
5 Sobic.001G145550 - -
6 Sobic.009G173700 expansin precursor, putative, expressed -
7 Sobic.007G149500 expressed protein -
8 Sobic.001G100300 - -
9 Sobic.009G213150 - -
10 Sobic.005G187700 receptor kinase, putative, expressed -
11 Sobic.001G531800 dihydrodipicolinate reductase, putative, expressed K16908: chloroplast NAD(P)H dehydrogenase
12 Sobic.001G455300 ZOS3-05 - C2H2 zinc finger protein, expressed -
13 Sobic.001G394000 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.001G285100 expressed protein -
15 Sobic.007G018900 RNA recognition motif containing protein, putative, expressed -
16 Sobic.009G020600 NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.002G094000 expressed protein -
18 Sobic.009G112800 WD domain, G-beta repeat domain containing protein, expressed -
19 Sobic.009G037500 expressed protein -
20 Sobic.002G163400 - -


Gene co-expression network
sample Sobic007G122400 Sobic007G122400 Sobic003G341900 Sobic003G341900 Sobic007G122400--Sobic003G341900 Sobic010G001400 Sobic010G001400 Sobic007G122400--Sobic010G001400 Sobic002G176700 Sobic002G176700 Sobic007G122400--Sobic002G176700 Sobic009G191900 Sobic009G191900 Sobic007G122400--Sobic009G191900 Sobic001G145550 Sobic001G145550 Sobic007G122400--Sobic001G145550 Sobic009G173700 Sobic009G173700 Sobic007G122400--Sobic009G173700 Sobic007G149500 Sobic007G149500 Sobic007G122400--Sobic007G149500 Sobic001G100300 Sobic001G100300 Sobic007G122400--Sobic001G100300 Sobic009G213150 Sobic009G213150 Sobic007G122400--Sobic009G213150 Sobic005G187700 Sobic005G187700 Sobic003G341900--Sobic005G187700 Sobic003G341900--Sobic009G173700 Sobic003G341900--Sobic007G149500 Sobic003G072000 Sobic003G072000 Sobic003G341900--Sobic003G072000 Sobic004G305733 Sobic004G305733 Sobic003G341900--Sobic004G305733 Sobic003G341900--Sobic001G100300 Sobic003G341900--Sobic001G145550 Sobic003G341900--Sobic009G213150 Sobic003G341900--Sobic002G176700 Sobic010G001400--Sobic007G122400 Sobic001G021601 Sobic001G021601 Sobic010G001400--Sobic001G021601 Sobic002G289300 Sobic002G289300 Sobic010G001400--Sobic002G289300 Sobic009G188200 Sobic009G188200 Sobic010G001400--Sobic009G188200 Sobic002G142400 Sobic002G142400 Sobic010G001400--Sobic002G142400 Sobic005G109101 Sobic005G109101 Sobic010G001400--Sobic005G109101 Sobic009G011050 Sobic009G011050 Sobic010G001400--Sobic009G011050 Sobic003G059450 Sobic003G059450 Sobic010G001400--Sobic003G059450 Sobic003G358150 Sobic003G358150 Sobic010G001400--Sobic003G358150 Sobic002G375500 Sobic002G375500 Sobic002G176700--Sobic002G375500 Sobic002G176700--Sobic003G341900 Sobic002G176700--Sobic001G145550 Sobic008G165500 Sobic008G165500 Sobic002G176700--Sobic008G165500 Sobic005G168200 Sobic005G168200 Sobic002G176700--Sobic005G168200 Sobic002G163400 Sobic002G163400 Sobic002G176700--Sobic002G163400 Sobic007G174500 Sobic007G174500 Sobic002G176700--Sobic007G174500 Sobic006G145300 Sobic006G145300 Sobic002G176700--Sobic006G145300 Sobic004G072600 Sobic004G072600 Sobic002G176700--Sobic004G072600 Sobic007G018900 Sobic007G018900 Sobic009G191900--Sobic007G018900 Sobic004G235100 Sobic004G235100 Sobic009G191900--Sobic004G235100 Sobic009G191900--Sobic007G122400 Sobic005G110433 Sobic005G110433 Sobic009G191900--Sobic005G110433 Sobic009G148400 Sobic009G148400 Sobic009G191900--Sobic009G148400 Sobic009G191900--Sobic003G341900 Sobic001G527550 Sobic001G527550 Sobic009G191900--Sobic001G527550 Sobic004G334501 Sobic004G334501 Sobic009G191900--Sobic004G334501 SobicK031300 SobicK031300 Sobic009G191900--SobicK031300 Sobic009G037500 Sobic009G037500 Sobic001G145550--Sobic009G037500 Sobic001G422001 Sobic001G422001 Sobic001G145550--Sobic001G422001 Sobic001G145550--Sobic009G213150 Sobic001G145550--Sobic007G149500 Sobic006G094900 Sobic006G094900 Sobic001G145550--Sobic006G094900 Sobic002G094000 Sobic002G094000 Sobic001G145550--Sobic002G094000 Sobic004G278800 Sobic004G278800 Sobic001G145550--Sobic004G278800 Sobic003G142500 Sobic003G142500 Sobic001G145550--Sobic003G142500 Sobic001G145550--Sobic002G375500 Sobic009G173700--Sobic005G187700 Sobic001G014600 Sobic001G014600 Sobic009G173700--Sobic001G014600 Sobic006G221500 Sobic006G221500 Sobic009G173700--Sobic006G221500 Sobic008G142500 Sobic008G142500 Sobic009G173700--Sobic008G142500 Sobic009G173700--Sobic001G100300 Sobic006G235801 Sobic006G235801 Sobic009G173700--Sobic006G235801 Sobic009G173700--Sobic003G341900 Sobic009G173700--Sobic007G149500 Sobic007G042700 Sobic007G042700 Sobic009G173700--Sobic007G042700 Sobic002G046150 Sobic002G046150 Sobic007G149500--Sobic002G046150 Sobic007G149500--Sobic001G145550 Sobic007G149500--Sobic005G187700 Sobic002G208700 Sobic002G208700 Sobic007G149500--Sobic002G208700 Sobic007G149500--Sobic001G100300 Sobic001G187900 Sobic001G187900 Sobic007G149500--Sobic001G187900 Sobic007G149500--Sobic009G037500 Sobic007G149500--Sobic003G341900 Sobic007G149500--Sobic009G173700 Sobic001G100300--Sobic009G173700 Sobic010G100600 Sobic010G100600 Sobic001G100300--Sobic010G100600 Sobic009G235400 Sobic009G235400 Sobic001G100300--Sobic009G235400 Sobic010G235100 Sobic010G235100 Sobic001G100300--Sobic010G235100 Sobic001G100300--Sobic007G149500 Sobic001G100300--Sobic006G235801 Sobic006G045601 Sobic006G045601 Sobic001G100300--Sobic006G045601 Sobic005G118800 Sobic005G118800 Sobic001G100300--Sobic005G118800 Sobic006G121950 Sobic006G121950 Sobic001G100300--Sobic006G121950 Sobic009G213150--Sobic002G094000 Sobic009G213150--Sobic006G094900 Sobic007G179266 Sobic007G179266 Sobic009G213150--Sobic007G179266 Sobic002G073000 Sobic002G073000 Sobic009G213150--Sobic002G073000 Sobic009G213150--Sobic003G142500 Sobic003G368550 Sobic003G368550 Sobic009G213150--Sobic003G368550 Sobic008G129500 Sobic008G129500 Sobic009G213150--Sobic008G129500 Sobic002G121050 Sobic002G121050 Sobic009G213150--Sobic002G121050 Sobic009G213150--Sobic003G072000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.