Gene annotation
Transcriptome id Sobic.001G372600.1
Synonym Sb01g035390, PCB2
Functional annotation DVR, putative, expressed
UniProt C5WZT4
Pfam PF01370
Panther DB PTHR14194 PTHR14194:SF36
NCBI CDD KOG1203; Predicted dehydrogenase
KEGG Orthology K19073; divinyl chlorophyllide a 8-vinyl-reductase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G18660 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os03g22780.1 : DVR, putative, expressed
MaizeGDB (Corn) Zm00025a002459
Brachypodium KQK21684
Barley HORVU4Hr1G048620.6 , HORVU4Hr1G048620.7 , HORVU4Hr1G048620.4 , HORVU4Hr1G048620.5 , HORVU4Hr1G048620.2 , HORVU4Hr1G048620.3 , HORVU4Hr1G048620.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G341500 rotamase(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed -
2 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
3 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
4 Sobic.003G214800 pentatricopeptide, putative, expressed -
5 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
6 Sobic.003G058600 cytochrome P450, putative, expressed -
7 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
8 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
9 Sobic.010G255600 thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed -
10 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
11 Sobic.002G328900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
12 Sobic.004G317900 expressed protein -
13 Sobic.001G203000 thylakoid lumenal protein, putative, expressed -
14 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
15 Sobic.007G116950 - -
16 Sobic.002G083700 - -
17 Sobic.001G323801 - -
18 Sobic.004G114800 expressed protein -
19 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I
20 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -


Gene co-expression network
sample Sobic001G372600 Sobic001G372600 Sobic002G341500 Sobic002G341500 Sobic001G372600--Sobic002G341500 Sobic001G017000 Sobic001G017000 Sobic001G372600--Sobic001G017000 Sobic001G484300 Sobic001G484300 Sobic001G372600--Sobic001G484300 Sobic003G214800 Sobic003G214800 Sobic001G372600--Sobic003G214800 Sobic008G112300 Sobic008G112300 Sobic001G372600--Sobic008G112300 Sobic003G058600 Sobic003G058600 Sobic001G372600--Sobic003G058600 Sobic004G076000 Sobic004G076000 Sobic001G372600--Sobic004G076000 Sobic003G328200 Sobic003G328200 Sobic001G372600--Sobic003G328200 Sobic010G255600 Sobic010G255600 Sobic001G372600--Sobic010G255600 Sobic004G311100 Sobic004G311100 Sobic002G341500--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic002G341500--Sobic003G386300 Sobic007G143700 Sobic007G143700 Sobic002G341500--Sobic007G143700 Sobic002G271700 Sobic002G271700 Sobic002G341500--Sobic002G271700 Sobic001G531200 Sobic001G531200 Sobic002G341500--Sobic001G531200 Sobic004G335800 Sobic004G335800 Sobic002G341500--Sobic004G335800 Sobic001G122400 Sobic001G122400 Sobic002G341500--Sobic001G122400 Sobic002G341500--Sobic008G112300 Sobic001G527100 Sobic001G527100 Sobic002G341500--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G017000--Sobic003G295800 Sobic001G017000--Sobic004G076000 Sobic004G317900 Sobic004G317900 Sobic001G017000--Sobic004G317900 Sobic001G323801 Sobic001G323801 Sobic001G017000--Sobic001G323801 Sobic001G027600 Sobic001G027600 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic003G246400 Sobic003G246400 Sobic001G017000--Sobic003G246400 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic010G233800 Sobic010G233800 Sobic001G484300--Sobic010G233800 Sobic001G484300--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic001G484300--Sobic001G076500 Sobic001G453300 Sobic001G453300 Sobic001G484300--Sobic001G453300 Sobic001G484300--Sobic003G246400 Sobic001G484300--Sobic001G027600 Sobic001G484300--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic001G484300--Sobic001G427000 Sobic007G185100 Sobic007G185100 Sobic001G484300--Sobic007G185100 Sobic010G279100 Sobic010G279100 Sobic003G214800--Sobic010G279100 Sobic003G214800--Sobic001G372600 Sobic003G310800 Sobic003G310800 Sobic003G214800--Sobic003G310800 Sobic003G345300 Sobic003G345300 Sobic003G214800--Sobic003G345300 Sobic004G289300 Sobic004G289300 Sobic003G214800--Sobic004G289300 Sobic003G214800--Sobic001G484300 Sobic003G214800--Sobic002G341500 Sobic001G284200 Sobic001G284200 Sobic003G214800--Sobic001G284200 Sobic004G342500 Sobic004G342500 Sobic003G214800--Sobic004G342500 Sobic008G112300--Sobic004G311100 Sobic008G112300--Sobic003G328200 Sobic009G091800 Sobic009G091800 Sobic008G112300--Sobic009G091800 Sobic008G112300--Sobic001G527100 Sobic008G112300--Sobic007G143700 Sobic002G297900 Sobic002G297900 Sobic008G112300--Sobic002G297900 Sobic004G116100 Sobic004G116100 Sobic008G112300--Sobic004G116100 Sobic008G112300--Sobic004G317900 Sobic008G112300--Sobic004G335800 Sobic004G060700 Sobic004G060700 Sobic003G058600--Sobic004G060700 Sobic001G003600 Sobic001G003600 Sobic003G058600--Sobic001G003600 Sobic001G435600 Sobic001G435600 Sobic003G058600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic003G058600--Sobic009G115050 Sobic007G009600 Sobic007G009600 Sobic003G058600--Sobic007G009600 Sobic002G329500 Sobic002G329500 Sobic003G058600--Sobic002G329500 Sobic006G172700 Sobic006G172700 Sobic003G058600--Sobic006G172700 Sobic002G415400 Sobic002G415400 Sobic003G058600--Sobic002G415400 Sobic002G415300 Sobic002G415300 Sobic003G058600--Sobic002G415300 Sobic004G076000--Sobic001G323801 Sobic004G076000--Sobic009G115050 Sobic004G076000--Sobic001G003600 Sobic008G123600 Sobic008G123600 Sobic004G076000--Sobic008G123600 Sobic004G076000--Sobic001G017000 Sobic002G020100 Sobic002G020100 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic003G328200--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic003G328200--Sobic004G116100 Sobic003G328200--Sobic004G311100 Sobic003G328200--Sobic003G386300 Sobic001G382100 Sobic001G382100 Sobic010G255600--Sobic001G382100 Sobic001G203000 Sobic001G203000 Sobic010G255600--Sobic001G203000 Sobic009G091850 Sobic009G091850 Sobic010G255600--Sobic009G091850 Sobic008G051000 Sobic008G051000 Sobic010G255600--Sobic008G051000 Sobic004G036100 Sobic004G036100 Sobic010G255600--Sobic004G036100 Sobic010G255600--Sobic007G185100 Sobic004G054500 Sobic004G054500 Sobic010G255600--Sobic004G054500 Sobic003G099400 Sobic003G099400 Sobic010G255600--Sobic003G099400 Sobic007G116950 Sobic007G116950 Sobic010G255600--Sobic007G116950
Octagon: transcription factors


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