Gene annotation
Transcriptome id Sobic.002G297900.1
Synonym Sb02g032870
Functional annotation CDGSH iron sulfur domain-containing protein 1, putative, expressed
UniProt C5X8F2
Pfam PF09360
Panther DB PTHR13680
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51720 : 2 iron, 2 sulfur cluster binding
RAP-DB (Rice) LOC_Os07g28400.1 : CDGSH iron sulfur domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a047861
Brachypodium KQK16365
Barley HORVU5Hr1G078960.1
Wheat TraesCS5A02G301100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
2 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
3 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
4 Sobic.010G215500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed K17710: pentatricopeptide repeat domain-containing protein 1
5 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
6 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
7 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
8 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
9 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
10 Sobic.003G383600 - -
11 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
12 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
13 Sobic.001G323801 - -
14 Sobic.004G317900 expressed protein -
15 Sobic.009G115050 - -
16 Sobic.002G353300 Geranilgeranil pyrophosphate synthetase 1 GGPS1 (Os)(PubMedID : 27208977)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
17 Sobic.001G366500 cytochrome P450, putative, expressed -
18 Sobic.007G165500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
20 Sobic.001G435600 - -


Gene co-expression network
sample Sobic002G297900 Sobic002G297900 Sobic008G112300 Sobic008G112300 Sobic002G297900--Sobic008G112300 Sobic004G076000 Sobic004G076000 Sobic002G297900--Sobic004G076000 Sobic003G295800 Sobic003G295800 Sobic002G297900--Sobic003G295800 Sobic010G215500 Sobic010G215500 Sobic002G297900--Sobic010G215500 Sobic008G123600 Sobic008G123600 Sobic002G297900--Sobic008G123600 Sobic003G328200 Sobic003G328200 Sobic002G297900--Sobic003G328200 Sobic007G185100 Sobic007G185100 Sobic002G297900--Sobic007G185100 Sobic001G017000 Sobic001G017000 Sobic002G297900--Sobic001G017000 Sobic004G311100 Sobic004G311100 Sobic002G297900--Sobic004G311100 Sobic008G112300--Sobic004G311100 Sobic008G112300--Sobic003G328200 Sobic009G091800 Sobic009G091800 Sobic008G112300--Sobic009G091800 Sobic001G527100 Sobic001G527100 Sobic008G112300--Sobic001G527100 Sobic007G143700 Sobic007G143700 Sobic008G112300--Sobic007G143700 Sobic008G112300--Sobic002G297900 Sobic004G116100 Sobic004G116100 Sobic008G112300--Sobic004G116100 Sobic004G317900 Sobic004G317900 Sobic008G112300--Sobic004G317900 Sobic004G335800 Sobic004G335800 Sobic008G112300--Sobic004G335800 Sobic001G323801 Sobic001G323801 Sobic004G076000--Sobic001G323801 Sobic009G115050 Sobic009G115050 Sobic004G076000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic004G076000--Sobic001G003600 Sobic004G076000--Sobic008G123600 Sobic004G076000--Sobic001G017000 Sobic002G020100 Sobic002G020100 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic006G172700 Sobic006G172700 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic010G215500--Sobic003G295800 Sobic010G215500--Sobic007G185100 Sobic010G215500--Sobic003G328200 Sobic003G383600 Sobic003G383600 Sobic010G215500--Sobic003G383600 Sobic010G215500--Sobic007G013400 Sobic010G215500--Sobic002G297900 Sobic010G215500--Sobic004G076000 Sobic010G215500--Sobic004G317900 Sobic010G215500--Sobic004G335800 Sobic008G123600--Sobic004G076000 Sobic008G123600--Sobic003G383600 Sobic008G123600--Sobic001G003600 Sobic008G123600--Sobic001G323801 Sobic001G069500 Sobic001G069500 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic008G123600--Sobic009G115050 Sobic008G123600--Sobic003G295800 Sobic008G123600--Sobic006G172700 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic003G328200--Sobic004G116100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic010G233800 Sobic010G233800 Sobic007G185100--Sobic010G233800 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic007G185100--Sobic003G328200 Sobic008G030000 Sobic008G030000 Sobic007G185100--Sobic008G030000 Sobic007G185100--Sobic004G076000 Sobic001G017000--Sobic003G295800 Sobic001G017000--Sobic004G076000 Sobic001G017000--Sobic004G317900 Sobic001G017000--Sobic001G323801 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic001G017000--Sobic003G246400 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic004G311100--Sobic008G112300 Sobic004G311100--Sobic007G143700 Sobic004G311100--Sobic003G386300 Sobic004G311100--Sobic004G335800 Sobic001G122400 Sobic001G122400 Sobic004G311100--Sobic001G122400 Sobic004G311100--Sobic001G527100 Sobic004G311100--Sobic004G116100 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700
Octagon: transcription factors


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