Gene annotation
Transcriptome id Sobic.008G123600.1
Synonym NDPK2, ATNDPK2, NDPKIA, NDPKIAIA, Sb08g017600, NDPK1A
Functional annotation nucleoside diphosphate kinase, putative, expressed
UniProt C5YPK6
Pfam PF00334
Panther DB PTHR11349 PTHR11349:SF44
NCBI CDD KOG0888; Nucleoside diphosphate kinase
KEGG Orthology K00940; ndk, nucleoside-diphosphate kinase
Gene Ontology GO:0006241; CTP biosynthetic process GO:0006228UTP biosynthetic process GO:0006183GTP biosynthetic process GO:0006165nucleoside diphosphate phosphorylation GO:0004550nucleoside diphosphate kinase activity


Orthologs (automatic annotation)
TAIR AT5G63310 : nucleoside diphosphate kinase 2
RAP-DB (Rice) LOC_Os12g36194.1 : nucleoside diphosphate kinase, putative, expressed
MaizeGDB (Corn) Zm00025a054325
Brachypodium KQJ86410
Barley HORVU5Hr1G024250.4 , HORVU5Hr1G024250.5 , HORVU5Hr1G024250.1 , HORVU5Hr1G024250.2 , HORVU5Hr1G024250.3
Wheat TraesCS5B02G098300 , TraesCS5B02G098300 , TraesCS5A02G092400 , TraesCS5A02G092400 , TraesCS5D02G104600 , TraesCS5D02G104600
Populus -


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cDNA sequences
Sobic.008G123600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
2 Sobic.003G383600 - -
3 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.001G323801 - -
5 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
6 Sobic.001G435600 - -
7 Sobic.009G115050 - -
8 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
9 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
11 Sobic.002G415400 - -
12 Sobic.002G415300 - -
13 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
14 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
15 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
16 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
17 Sobic.002G020100 chalcone synthase, putative, expressed -
18 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
19 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.002G297900 CDGSH iron sulfur domain-containing protein 1, putative, expressed -


Gene co-expression network
sample Sobic008G123600 Sobic008G123600 Sobic004G076000 Sobic004G076000 Sobic008G123600--Sobic004G076000 Sobic003G383600 Sobic003G383600 Sobic008G123600--Sobic003G383600 Sobic001G003600 Sobic001G003600 Sobic008G123600--Sobic001G003600 Sobic001G323801 Sobic001G323801 Sobic008G123600--Sobic001G323801 Sobic001G069500 Sobic001G069500 Sobic008G123600--Sobic001G069500 Sobic001G435600 Sobic001G435600 Sobic008G123600--Sobic001G435600 Sobic009G115050 Sobic009G115050 Sobic008G123600--Sobic009G115050 Sobic003G295800 Sobic003G295800 Sobic008G123600--Sobic003G295800 Sobic006G172700 Sobic006G172700 Sobic008G123600--Sobic006G172700 Sobic004G076000--Sobic001G323801 Sobic004G076000--Sobic009G115050 Sobic004G076000--Sobic001G003600 Sobic004G076000--Sobic008G123600 Sobic001G017000 Sobic001G017000 Sobic004G076000--Sobic001G017000 Sobic002G020100 Sobic002G020100 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic003G383600--Sobic003G295800 Sobic007G013400 Sobic007G013400 Sobic003G383600--Sobic007G013400 Sobic003G383600--Sobic008G123600 Sobic003G383600--Sobic001G069500 Sobic009G001500 Sobic009G001500 Sobic003G383600--Sobic009G001500 Sobic008G030000 Sobic008G030000 Sobic003G383600--Sobic008G030000 Sobic009G098100 Sobic009G098100 Sobic003G383600--Sobic009G098100 Sobic010G215500 Sobic010G215500 Sobic003G383600--Sobic010G215500 Sobic003G383500 Sobic003G383500 Sobic003G383600--Sobic003G383500 Sobic001G003600--Sobic006G172700 Sobic001G003600--Sobic002G020100 Sobic001G003600--Sobic009G115050 Sobic003G096100 Sobic003G096100 Sobic001G003600--Sobic003G096100 Sobic001G003600--Sobic004G076000 Sobic001G003600--Sobic001G435600 Sobic002G329500 Sobic002G329500 Sobic001G003600--Sobic002G329500 Sobic003G058600 Sobic003G058600 Sobic001G003600--Sobic003G058600 Sobic001G003600--Sobic005G110436 Sobic001G323801--Sobic004G076000 Sobic001G323801--Sobic001G017000 Sobic001G323801--Sobic008G123600 Sobic001G323801--Sobic009G115050 Sobic004G317900 Sobic004G317900 Sobic001G323801--Sobic004G317900 Sobic003G074600 Sobic003G074600 Sobic001G323801--Sobic003G074600 Sobic001G323801--Sobic003G295800 Sobic001G323801--Sobic001G003600 Sobic001G323801--Sobic005G110436 Sobic001G069500--Sobic009G098100 Sobic001G188600 Sobic001G188600 Sobic001G069500--Sobic001G188600 Sobic007G211100 Sobic007G211100 Sobic001G069500--Sobic007G211100 Sobic001G069500--Sobic003G295800 Sobic001G069500--Sobic003G383600 Sobic001G069500--Sobic008G123600 Sobic001G069500--Sobic009G001500 Sobic001G069500--Sobic008G030000 Sobic001G069500--Sobic007G013400 Sobic002G415300 Sobic002G415300 Sobic001G435600--Sobic002G415300 Sobic002G415400 Sobic002G415400 Sobic001G435600--Sobic002G415400 Sobic004G060700 Sobic004G060700 Sobic001G435600--Sobic004G060700 Sobic002G416950 Sobic002G416950 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic008G163200 Sobic008G163200 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic007G170800 Sobic007G170800 Sobic001G435600--Sobic007G170800 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic009G115050--Sobic002G415400 Sobic009G115050--Sobic001G435600 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic009G115050--Sobic005G110436 Sobic001G127700 Sobic001G127700 Sobic009G115050--Sobic001G127700 Sobic009G115050--Sobic002G020100 Sobic003G295800--Sobic007G013400 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic001G027600 Sobic001G027600 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G295800--Sobic003G383500 Sobic006G172700--Sobic001G003600 Sobic009G059100 Sobic009G059100 Sobic006G172700--Sobic009G059100 Sobic006G172700--Sobic002G020100 Sobic006G172700--Sobic001G127700 Sobic005G056201 Sobic005G056201 Sobic006G172700--Sobic005G056201 Sobic006G172700--Sobic004G076000 Sobic006G172700--Sobic009G115050 Sobic006G172700--Sobic004G060700 Sobic006G172700--Sobic003G096100
Octagon: transcription factors


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