Gene annotation
Transcriptome id Sobic.002G020100.1
Synonym CHS, Sb02g001870, ATCHS, TT4
Functional annotation chalcone synthase, putative, expressed
UniProt C5X8N2
Pfam PF08541 PF08392
Panther DB PTHR11877 PTHR11877:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os07g34190.1 : chalcone and stilbene synthases, putative, expressed
MaizeGDB (Corn) Zm00025a033583
Brachypodium KQJ89844 , KQK13828 , KQK19828
Barley HORVU5Hr1G093950.3 , HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU7Hr1G020920.4 , HORVU7Hr1G020920.5 , HORVU7Hr1G020920.6 , HORVU7Hr1G020920.7 , HORVU7Hr1G020920.1 , HORVU7Hr1G020920.2 , HORVU7Hr1G020920.3 , HORVU7Hr1G024480.2 , HORVU7Hr1G024480.1 , HORVU7Hr1G009190.1 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU5Hr1G093950.4 , HORVU3Hr1G006040.1 , HORVU5Hr1G093950.1 , HORVU5Hr1G093950.2 , HORVU2Hr1G116390.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4 , HORVU3Hr1G006040.2
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS2D02G016100 , TraesCS7D02G089300 , TraesCS2B02G558400 , TraesCS2B02G558400 , TraesCS4D02G351300 , TraesCS2A02G025600 , TraesCS2A02G035300 , TraesCS4A02G437900 , TraesCS4B02G357100 , TraesCS6D02G018500 , TraesCS5A02G526900 , TraesCS7A02G093900 , TraesCS2B02G006000 , TraesCS6B02G327900 , TraesCS2B02G613100 , TraesCS4A02G292500 , TraesCS2D02G034500 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS2D02G530600 , TraesCS5A02G379500 , TraesCS5A02G379400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.005G056201 - -
4 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
5 Sobic.009G115050 - -
6 Sobic.009G059100 Cupin domain containing protein, expressed -
7 Sobic.002G329500 Beta amylase BAM (Zm)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
8 Sobic.009G098100 T-complex protein, putative, expressed -
9 Sobic.001G435600 - -
10 Sobic.006G025700 - -
11 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
12 Sobic.005G110436 - -
13 Sobic.002G415400 - -
14 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
15 Sobic.003G096100 auxin-induced protein 5NG4, putative, expressed -
16 Sobic.003G058600 cytochrome P450, putative, expressed -
17 Sobic.002G415300 - -
18 Sobic.001G069500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTP-binding protein, putative, expressed K06942: ribosome-binding ATPase
19 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
20 Sobic.001G323801 - -


Gene co-expression network
sample Sobic002G020100 Sobic002G020100 Sobic001G003600 Sobic001G003600 Sobic002G020100--Sobic001G003600 Sobic006G172700 Sobic006G172700 Sobic002G020100--Sobic006G172700 Sobic005G056201 Sobic005G056201 Sobic002G020100--Sobic005G056201 Sobic004G076000 Sobic004G076000 Sobic002G020100--Sobic004G076000 Sobic009G115050 Sobic009G115050 Sobic002G020100--Sobic009G115050 Sobic009G059100 Sobic009G059100 Sobic002G020100--Sobic009G059100 Sobic002G329500 Sobic002G329500 Sobic002G020100--Sobic002G329500 Sobic009G098100 Sobic009G098100 Sobic002G020100--Sobic009G098100 Sobic001G435600 Sobic001G435600 Sobic002G020100--Sobic001G435600 Sobic001G003600--Sobic006G172700 Sobic001G003600--Sobic002G020100 Sobic001G003600--Sobic009G115050 Sobic003G096100 Sobic003G096100 Sobic001G003600--Sobic003G096100 Sobic001G003600--Sobic004G076000 Sobic001G003600--Sobic001G435600 Sobic001G003600--Sobic002G329500 Sobic003G058600 Sobic003G058600 Sobic001G003600--Sobic003G058600 Sobic005G110436 Sobic005G110436 Sobic001G003600--Sobic005G110436 Sobic006G172700--Sobic001G003600 Sobic006G172700--Sobic009G059100 Sobic006G172700--Sobic002G020100 Sobic001G127700 Sobic001G127700 Sobic006G172700--Sobic001G127700 Sobic006G172700--Sobic005G056201 Sobic006G172700--Sobic004G076000 Sobic006G172700--Sobic009G115050 Sobic004G060700 Sobic004G060700 Sobic006G172700--Sobic004G060700 Sobic006G172700--Sobic003G096100 Sobic005G056201--Sobic006G172700 Sobic005G056201--Sobic002G020100 Sobic005G056201--Sobic001G003600 Sobic005G056201--Sobic009G059100 Sobic005G056201--Sobic004G076000 Sobic003G157500 Sobic003G157500 Sobic005G056201--Sobic003G157500 Sobic005G056201--Sobic003G096100 Sobic005G020200 Sobic005G020200 Sobic005G056201--Sobic005G020200 Sobic006G025700 Sobic006G025700 Sobic005G056201--Sobic006G025700 Sobic001G323801 Sobic001G323801 Sobic004G076000--Sobic001G323801 Sobic004G076000--Sobic009G115050 Sobic004G076000--Sobic001G003600 Sobic008G123600 Sobic008G123600 Sobic004G076000--Sobic008G123600 Sobic001G017000 Sobic001G017000 Sobic004G076000--Sobic001G017000 Sobic004G076000--Sobic002G020100 Sobic004G076000--Sobic005G110436 Sobic004G076000--Sobic006G172700 Sobic003G295800 Sobic003G295800 Sobic004G076000--Sobic003G295800 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic002G415400 Sobic002G415400 Sobic009G115050--Sobic002G415400 Sobic009G115050--Sobic001G435600 Sobic002G415300 Sobic002G415300 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic009G115050--Sobic005G110436 Sobic009G115050--Sobic001G127700 Sobic009G115050--Sobic002G020100 Sobic009G059100--Sobic006G172700 Sobic009G059100--Sobic003G157500 Sobic009G059100--Sobic006G025700 Sobic009G059100--Sobic001G003600 Sobic009G059100--Sobic002G020100 Sobic005G200600 Sobic005G200600 Sobic009G059100--Sobic005G200600 Sobic009G059100--Sobic005G056201 Sobic009G059100--Sobic003G096100 Sobic009G059100--Sobic001G435600 Sobic002G329500--Sobic009G115050 Sobic002G329500--Sobic002G415400 Sobic002G329500--Sobic001G435600 Sobic002G329500--Sobic002G415300 Sobic002G329500--Sobic001G003600 Sobic002G329500--Sobic004G060700 Sobic002G329500--Sobic001G127700 Sobic002G329500--Sobic003G058600 Sobic002G329500--Sobic004G076000 Sobic001G069500 Sobic001G069500 Sobic009G098100--Sobic001G069500 Sobic009G098100--Sobic003G295800 Sobic001G188600 Sobic001G188600 Sobic009G098100--Sobic001G188600 Sobic001G453300 Sobic001G453300 Sobic009G098100--Sobic001G453300 Sobic001G383900 Sobic001G383900 Sobic009G098100--Sobic001G383900 Sobic001G027600 Sobic001G027600 Sobic009G098100--Sobic001G027600 Sobic008G030000 Sobic008G030000 Sobic009G098100--Sobic008G030000 Sobic009G098100--Sobic004G076000 Sobic009G098100--Sobic002G020100 Sobic001G435600--Sobic002G415300 Sobic001G435600--Sobic002G415400 Sobic001G435600--Sobic004G060700 Sobic002G416950 Sobic002G416950 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic008G163200 Sobic008G163200 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic007G170800 Sobic007G170800 Sobic001G435600--Sobic007G170800
Octagon: transcription factors


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