Gene annotation
Transcriptome id Sobic.002G329500.3,Sobic.002G329500.2,Sobic.002G329500.1
Synonym AT-BETA-AMY, BAM5, BMY1, Sb02g035600, ATBETA-AMY, RAM1
Functional annotation Beta amylase BAM (Zm) (PubMedID : 27208977)
beta-amylase, putative, expressed
UniProt A0A1B6QEU4 , A0A1B6QET3 , A0A1B6QET0 , D3JBK2
Pfam PF01373
Panther DB PTHR31352 PTHR31352:SF11
NCBI CDD -
KEGG Orthology K01177; beta-amylase
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT4G15210 : beta-amylase 5
RAP-DB (Rice) LOC_Os07g35880.1,LOC_Os07g35940.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a003420 , Zm00025a051902 , Zm00025a048305 , Zm00025a014852
Brachypodium KQK15872
Barley HORVU4Hr1G089510.9 , HORVU4Hr1G089510.8 , HORVU4Hr1G089510.6 , HORVU4Hr1G089510.5 , HORVU4Hr1G089510.4 , HORVU4Hr1G089510.3 , HORVU4Hr1G089510.2 , HORVU4Hr1G089510.1 , HORVU4Hr1G089510.7
Wheat TraesCS2D02G220900 , TraesCS2D02G220900 , TraesCS2D02G220900 , TraesCS2B02G240100 , TraesCS2B02G240100 , TraesCS2A02G215100 , TraesCS2A02G215100 , TraesCS4B02G393500 , TraesCS4B02G393500
Populus -


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cDNA sequences
Sobic.002G329500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G115050 - -
2 Sobic.002G415400 - -
3 Sobic.001G435600 - -
4 Sobic.002G415300 - -
5 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
7 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
8 Sobic.003G058600 cytochrome P450, putative, expressed -
9 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
10 Sobic.005G110436 - -
11 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
12 Sobic.002G020100 chalcone synthase, putative, expressed -
13 Sobic.003G074600 Lecithin: cholesterol acyltransferase family protein (At)(PubMedID : 27208977)@lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
14 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
15 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.005G212400 Leucine Rich Repeat family protein, expressed -
17 Sobic.007G009600 expressed protein -
18 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
19 Sobic.002G416950 - -
20 Sobic.003G068300 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G329500 Sobic002G329500 Sobic009G115050 Sobic009G115050 Sobic002G329500--Sobic009G115050 Sobic002G415400 Sobic002G415400 Sobic002G329500--Sobic002G415400 Sobic001G435600 Sobic001G435600 Sobic002G329500--Sobic001G435600 Sobic002G415300 Sobic002G415300 Sobic002G329500--Sobic002G415300 Sobic001G003600 Sobic001G003600 Sobic002G329500--Sobic001G003600 Sobic004G060700 Sobic004G060700 Sobic002G329500--Sobic004G060700 Sobic001G127700 Sobic001G127700 Sobic002G329500--Sobic001G127700 Sobic003G058600 Sobic003G058600 Sobic002G329500--Sobic003G058600 Sobic004G076000 Sobic004G076000 Sobic002G329500--Sobic004G076000 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic009G115050--Sobic002G415400 Sobic009G115050--Sobic001G435600 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic005G110436 Sobic005G110436 Sobic009G115050--Sobic005G110436 Sobic009G115050--Sobic001G127700 Sobic002G020100 Sobic002G020100 Sobic009G115050--Sobic002G020100 Sobic002G415400--Sobic002G415300 Sobic002G415400--Sobic001G435600 Sobic002G415400--Sobic004G060700 Sobic003G068300 Sobic003G068300 Sobic002G415400--Sobic003G068300 Sobic008G163200 Sobic008G163200 Sobic002G415400--Sobic008G163200 Sobic002G415400--Sobic009G115050 Sobic002G416950 Sobic002G416950 Sobic002G415400--Sobic002G416950 Sobic002G415400--Sobic002G329500 Sobic006G238100 Sobic006G238100 Sobic002G415400--Sobic006G238100 Sobic001G435600--Sobic002G415300 Sobic001G435600--Sobic002G415400 Sobic001G435600--Sobic004G060700 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic007G170800 Sobic007G170800 Sobic001G435600--Sobic007G170800 Sobic002G415300--Sobic002G415400 Sobic002G415300--Sobic004G060700 Sobic002G415300--Sobic008G163200 Sobic002G415300--Sobic001G435600 Sobic002G415300--Sobic003G068300 Sobic002G415300--Sobic002G416950 Sobic002G415300--Sobic009G115050 Sobic002G415300--Sobic002G329500 Sobic002G415300--Sobic007G170800 Sobic006G172700 Sobic006G172700 Sobic001G003600--Sobic006G172700 Sobic001G003600--Sobic002G020100 Sobic001G003600--Sobic009G115050 Sobic003G096100 Sobic003G096100 Sobic001G003600--Sobic003G096100 Sobic001G003600--Sobic004G076000 Sobic001G003600--Sobic001G435600 Sobic001G003600--Sobic002G329500 Sobic001G003600--Sobic003G058600 Sobic001G003600--Sobic005G110436 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic007G009600 Sobic007G009600 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic004G060700--Sobic006G238100 Sobic001G379300 Sobic001G379300 Sobic004G060700--Sobic001G379300 Sobic001G127700--Sobic006G172700 Sobic001G127700--Sobic009G115050 Sobic005G212400 Sobic005G212400 Sobic001G127700--Sobic005G212400 Sobic001G127700--Sobic004G060700 Sobic001G127700--Sobic001G003600 Sobic001G127700--Sobic001G435600 Sobic001G127700--Sobic007G170800 Sobic001G127700--Sobic002G329500 Sobic001G127700--Sobic002G415400 Sobic003G058600--Sobic004G060700 Sobic003G058600--Sobic001G003600 Sobic003G058600--Sobic001G435600 Sobic003G058600--Sobic009G115050 Sobic003G058600--Sobic007G009600 Sobic003G058600--Sobic002G329500 Sobic003G058600--Sobic006G172700 Sobic003G058600--Sobic002G415400 Sobic003G058600--Sobic002G415300 Sobic001G323801 Sobic001G323801 Sobic004G076000--Sobic001G323801 Sobic004G076000--Sobic009G115050 Sobic004G076000--Sobic001G003600 Sobic008G123600 Sobic008G123600 Sobic004G076000--Sobic008G123600 Sobic001G017000 Sobic001G017000 Sobic004G076000--Sobic001G017000 Sobic004G076000--Sobic002G020100 Sobic004G076000--Sobic005G110436 Sobic004G076000--Sobic006G172700 Sobic003G295800 Sobic003G295800 Sobic004G076000--Sobic003G295800
Octagon: transcription factors


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