Gene annotation
Transcriptome id Sobic.005G212400.2
Synonym Sb05g026460, RPS3, RPM1
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1Z5RK93
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF485
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g42660.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G127700 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
2 Sobic.002G415400 - -
3 Sobic.010G124200 expressed protein -
4 Sobic.002G415300 - -
5 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.009G115050 - -
7 Sobic.001G435600 - -
8 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
9 Sobic.002G329500 Beta amylase BAM (Zm)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
10 Sobic.002G397400 thiol protease SEN102 precursor, putative, expressed -
11 Sobic.006G238100 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
13 Sobic.003G068300 transferase family protein, putative, expressed -
14 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
15 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.002G020100 chalcone synthase, putative, expressed -
17 Sobic.002G416950 - -
18 Sobic.009G059100 Cupin domain containing protein, expressed -
19 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
20 Sobic.003G058600 cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic005G212400 Sobic005G212400 Sobic001G127700 Sobic001G127700 Sobic005G212400--Sobic001G127700 Sobic002G415400 Sobic002G415400 Sobic005G212400--Sobic002G415400 Sobic010G124200 Sobic010G124200 Sobic005G212400--Sobic010G124200 Sobic002G415300 Sobic002G415300 Sobic005G212400--Sobic002G415300 Sobic006G172700 Sobic006G172700 Sobic005G212400--Sobic006G172700 Sobic009G115050 Sobic009G115050 Sobic005G212400--Sobic009G115050 Sobic001G435600 Sobic001G435600 Sobic005G212400--Sobic001G435600 Sobic004G060700 Sobic004G060700 Sobic005G212400--Sobic004G060700 Sobic002G329500 Sobic002G329500 Sobic005G212400--Sobic002G329500 Sobic001G127700--Sobic006G172700 Sobic001G127700--Sobic009G115050 Sobic001G127700--Sobic005G212400 Sobic001G127700--Sobic004G060700 Sobic001G003600 Sobic001G003600 Sobic001G127700--Sobic001G003600 Sobic001G127700--Sobic001G435600 Sobic007G170800 Sobic007G170800 Sobic001G127700--Sobic007G170800 Sobic001G127700--Sobic002G329500 Sobic001G127700--Sobic002G415400 Sobic002G415400--Sobic002G415300 Sobic002G415400--Sobic001G435600 Sobic002G415400--Sobic004G060700 Sobic003G068300 Sobic003G068300 Sobic002G415400--Sobic003G068300 Sobic008G163200 Sobic008G163200 Sobic002G415400--Sobic008G163200 Sobic002G415400--Sobic009G115050 Sobic002G416950 Sobic002G416950 Sobic002G415400--Sobic002G416950 Sobic002G415400--Sobic002G329500 Sobic006G238100 Sobic006G238100 Sobic002G415400--Sobic006G238100 Sobic010G124200--Sobic005G212400 Sobic010G124200--Sobic006G172700 Sobic010G124200--Sobic001G127700 Sobic006G001400 Sobic006G001400 Sobic010G124200--Sobic006G001400 Sobic002G397400 Sobic002G397400 Sobic010G124200--Sobic002G397400 Sobic005G147800 Sobic005G147800 Sobic010G124200--Sobic005G147800 Sobic009G059100 Sobic009G059100 Sobic010G124200--Sobic009G059100 Sobic002G020100 Sobic002G020100 Sobic010G124200--Sobic002G020100 Sobic007G142300 Sobic007G142300 Sobic010G124200--Sobic007G142300 Sobic002G415300--Sobic002G415400 Sobic002G415300--Sobic004G060700 Sobic002G415300--Sobic008G163200 Sobic002G415300--Sobic001G435600 Sobic002G415300--Sobic003G068300 Sobic002G415300--Sobic002G416950 Sobic002G415300--Sobic009G115050 Sobic002G415300--Sobic002G329500 Sobic002G415300--Sobic007G170800 Sobic006G172700--Sobic001G003600 Sobic006G172700--Sobic009G059100 Sobic006G172700--Sobic002G020100 Sobic006G172700--Sobic001G127700 Sobic005G056201 Sobic005G056201 Sobic006G172700--Sobic005G056201 Sobic004G076000 Sobic004G076000 Sobic006G172700--Sobic004G076000 Sobic006G172700--Sobic009G115050 Sobic006G172700--Sobic004G060700 Sobic003G096100 Sobic003G096100 Sobic006G172700--Sobic003G096100 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic009G115050--Sobic002G415400 Sobic009G115050--Sobic001G435600 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic005G110436 Sobic005G110436 Sobic009G115050--Sobic005G110436 Sobic009G115050--Sobic001G127700 Sobic009G115050--Sobic002G020100 Sobic001G435600--Sobic002G415300 Sobic001G435600--Sobic002G415400 Sobic001G435600--Sobic004G060700 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic001G435600--Sobic007G170800 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic007G009600 Sobic007G009600 Sobic004G060700--Sobic007G009600 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic004G060700--Sobic006G238100 Sobic001G379300 Sobic001G379300 Sobic004G060700--Sobic001G379300 Sobic002G329500--Sobic009G115050 Sobic002G329500--Sobic002G415400 Sobic002G329500--Sobic001G435600 Sobic002G329500--Sobic002G415300 Sobic002G329500--Sobic001G003600 Sobic002G329500--Sobic004G060700 Sobic002G329500--Sobic001G127700 Sobic003G058600 Sobic003G058600 Sobic002G329500--Sobic003G058600 Sobic002G329500--Sobic004G076000
Octagon: transcription factors


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