Gene annotation
Transcriptome id Sobic.001G127700.1
Synonym Sb01g011190
Functional annotation possible lysine decarboxylase domain containing protein, expressed
UniProt C5WNW4
Pfam PF03641
Panther DB PTHR31223 PTHR31223:SF8
NCBI CDD -
KEGG Orthology K06966; pyrimidine/purine-5'-nucleotide nucleosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37210 : lysine decarboxylase family protein
RAP-DB (Rice) LOC_Os03g49050.1 : possible lysine decarboxylase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007701
Brachypodium KQK13678
Barley HORVU4Hr1G005660.12 , HORVU4Hr1G005660.5 , HORVU4Hr1G005660.7 , HORVU4Hr1G005660.6 , HORVU4Hr1G005660.9 , HORVU4Hr1G005660.8 , HORVU4Hr1G005660.4 , HORVU4Hr1G005660.1 , HORVU4Hr1G005660.3 , HORVU4Hr1G005660.2 , HORVU4Hr1G005660.11 , HORVU4Hr1G005660.10 , HORVU4Hr1G005660.13 , HORVU4Hr1G005660.14
Wheat TraesCS4B02G035700 , TraesCS4D02G033800 , TraesCS4A02G277200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G172700 LTPL122 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.009G115050 - -
3 Sobic.005G212400 Leucine Rich Repeat family protein, expressed -
4 Sobic.004G060700 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
5 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.001G435600 - -
7 Sobic.007G170800 Fatty acyl CoA reductase 1 FAR1 (At)(PubMedID : 27208977)@male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
8 Sobic.002G329500 Beta amylase BAM (Zm)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
9 Sobic.002G415400 - -
10 Sobic.002G415300 - -
11 Sobic.007G009600 expressed protein -
12 Sobic.005G110436 - -
13 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
14 Sobic.003G058600 cytochrome P450, putative, expressed -
15 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
16 Sobic.002G416950 - -
17 Sobic.009G059100 Cupin domain containing protein, expressed -
18 Sobic.008G163200 OsSCP9 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
19 Sobic.003G096100 auxin-induced protein 5NG4, putative, expressed -
20 Sobic.003G074600 Lecithin: cholesterol acyltransferase family protein (At)(PubMedID : 27208977)@lecithin:cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III


Gene co-expression network
sample Sobic001G127700 Sobic001G127700 Sobic006G172700 Sobic006G172700 Sobic001G127700--Sobic006G172700 Sobic009G115050 Sobic009G115050 Sobic001G127700--Sobic009G115050 Sobic005G212400 Sobic005G212400 Sobic001G127700--Sobic005G212400 Sobic004G060700 Sobic004G060700 Sobic001G127700--Sobic004G060700 Sobic001G003600 Sobic001G003600 Sobic001G127700--Sobic001G003600 Sobic001G435600 Sobic001G435600 Sobic001G127700--Sobic001G435600 Sobic007G170800 Sobic007G170800 Sobic001G127700--Sobic007G170800 Sobic002G329500 Sobic002G329500 Sobic001G127700--Sobic002G329500 Sobic002G415400 Sobic002G415400 Sobic001G127700--Sobic002G415400 Sobic006G172700--Sobic001G003600 Sobic009G059100 Sobic009G059100 Sobic006G172700--Sobic009G059100 Sobic002G020100 Sobic002G020100 Sobic006G172700--Sobic002G020100 Sobic006G172700--Sobic001G127700 Sobic005G056201 Sobic005G056201 Sobic006G172700--Sobic005G056201 Sobic004G076000 Sobic004G076000 Sobic006G172700--Sobic004G076000 Sobic006G172700--Sobic009G115050 Sobic006G172700--Sobic004G060700 Sobic003G096100 Sobic003G096100 Sobic006G172700--Sobic003G096100 Sobic009G115050--Sobic002G329500 Sobic009G115050--Sobic001G003600 Sobic009G115050--Sobic002G415400 Sobic009G115050--Sobic001G435600 Sobic002G415300 Sobic002G415300 Sobic009G115050--Sobic002G415300 Sobic009G115050--Sobic004G076000 Sobic005G110436 Sobic005G110436 Sobic009G115050--Sobic005G110436 Sobic009G115050--Sobic001G127700 Sobic009G115050--Sobic002G020100 Sobic005G212400--Sobic001G127700 Sobic005G212400--Sobic002G415400 Sobic010G124200 Sobic010G124200 Sobic005G212400--Sobic010G124200 Sobic005G212400--Sobic002G415300 Sobic005G212400--Sobic006G172700 Sobic005G212400--Sobic009G115050 Sobic005G212400--Sobic001G435600 Sobic005G212400--Sobic004G060700 Sobic005G212400--Sobic002G329500 Sobic002G416950 Sobic002G416950 Sobic004G060700--Sobic002G416950 Sobic004G060700--Sobic002G415300 Sobic004G060700--Sobic007G170800 Sobic007G009600 Sobic007G009600 Sobic004G060700--Sobic007G009600 Sobic008G163200 Sobic008G163200 Sobic004G060700--Sobic008G163200 Sobic004G060700--Sobic002G415400 Sobic004G060700--Sobic001G435600 Sobic006G238100 Sobic006G238100 Sobic004G060700--Sobic006G238100 Sobic001G379300 Sobic001G379300 Sobic004G060700--Sobic001G379300 Sobic001G003600--Sobic006G172700 Sobic001G003600--Sobic002G020100 Sobic001G003600--Sobic009G115050 Sobic001G003600--Sobic003G096100 Sobic001G003600--Sobic004G076000 Sobic001G003600--Sobic001G435600 Sobic001G003600--Sobic002G329500 Sobic003G058600 Sobic003G058600 Sobic001G003600--Sobic003G058600 Sobic001G003600--Sobic005G110436 Sobic001G435600--Sobic002G415300 Sobic001G435600--Sobic002G415400 Sobic001G435600--Sobic004G060700 Sobic001G435600--Sobic002G416950 Sobic001G435600--Sobic009G115050 Sobic001G435600--Sobic002G329500 Sobic001G435600--Sobic008G163200 Sobic001G435600--Sobic001G003600 Sobic001G435600--Sobic007G170800 Sobic007G170800--Sobic004G060700 Sobic003G114200 Sobic003G114200 Sobic007G170800--Sobic003G114200 Sobic007G170800--Sobic007G009600 Sobic007G170800--Sobic002G416950 Sobic007G170800--Sobic008G163200 Sobic007G170800--Sobic001G435600 Sobic007G170800--Sobic002G415300 Sobic001G541300 Sobic001G541300 Sobic007G170800--Sobic001G541300 Sobic007G170800--Sobic001G379300 Sobic002G329500--Sobic009G115050 Sobic002G329500--Sobic002G415400 Sobic002G329500--Sobic001G435600 Sobic002G329500--Sobic002G415300 Sobic002G329500--Sobic001G003600 Sobic002G329500--Sobic004G060700 Sobic002G329500--Sobic001G127700 Sobic002G329500--Sobic003G058600 Sobic002G329500--Sobic004G076000 Sobic002G415400--Sobic002G415300 Sobic002G415400--Sobic001G435600 Sobic002G415400--Sobic004G060700 Sobic003G068300 Sobic003G068300 Sobic002G415400--Sobic003G068300 Sobic002G415400--Sobic008G163200 Sobic002G415400--Sobic009G115050 Sobic002G415400--Sobic002G416950 Sobic002G415400--Sobic002G329500 Sobic002G415400--Sobic006G238100
Octagon: transcription factors


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