Gene annotation
Transcriptome id Sobic.001G017000.1
Synonym Sb01g001650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ribosomal protein S6, putative, expressed
UniProt C5WT08
Pfam PF01250
Panther DB PTHR21011 PTHR21011:SF1
NCBI CDD -
KEGG Orthology K02990; RP-S6, MRPS6, small subunit ribosomal protein S6
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G64510 : Translation elongation factor EF1B/ribosomal protein S6 family protein
RAP-DB (Rice) LOC_Os03g62630.1 : ribosomal protein S6, putative, expressed
MaizeGDB (Corn) Zm00025a008982
Brachypodium KQK12179
Barley HORVU5Hr1G120250.1
Wheat TraesCS4A02G342800 , TraesCS5D02G530200 , TraesCS5B02G531900 , TraesCS5B02G531900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
2 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
3 Sobic.004G317900 expressed protein -
4 Sobic.001G323801 - -
5 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
6 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
7 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
8 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
9 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
10 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
11 Sobic.008G123600 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
12 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
13 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
14 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
15 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
16 Sobic.001G003600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.003G383500 rhodanese-like, putative, expressed -
18 Sobic.009G098100 T-complex protein, putative, expressed -
19 Sobic.009G059100 Cupin domain containing protein, expressed -
20 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein


Gene co-expression network
sample Sobic001G017000 Sobic001G017000 Sobic003G295800 Sobic003G295800 Sobic001G017000--Sobic003G295800 Sobic004G076000 Sobic004G076000 Sobic001G017000--Sobic004G076000 Sobic004G317900 Sobic004G317900 Sobic001G017000--Sobic004G317900 Sobic001G323801 Sobic001G323801 Sobic001G017000--Sobic001G323801 Sobic001G027600 Sobic001G027600 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic003G246400 Sobic003G246400 Sobic001G017000--Sobic003G246400 Sobic003G328200 Sobic003G328200 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic001G040000 Sobic001G040000 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic003G295800--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500 Sobic004G076000--Sobic001G323801 Sobic009G115050 Sobic009G115050 Sobic004G076000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic004G076000--Sobic001G003600 Sobic008G123600 Sobic008G123600 Sobic004G076000--Sobic008G123600 Sobic004G076000--Sobic001G017000 Sobic002G020100 Sobic002G020100 Sobic004G076000--Sobic002G020100 Sobic005G110436 Sobic005G110436 Sobic004G076000--Sobic005G110436 Sobic006G172700 Sobic006G172700 Sobic004G076000--Sobic006G172700 Sobic004G076000--Sobic003G295800 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G323801--Sobic004G076000 Sobic001G323801--Sobic001G017000 Sobic001G323801--Sobic008G123600 Sobic001G323801--Sobic009G115050 Sobic001G323801--Sobic004G317900 Sobic003G074600 Sobic003G074600 Sobic001G323801--Sobic003G074600 Sobic001G323801--Sobic003G295800 Sobic001G323801--Sobic001G003600 Sobic001G323801--Sobic005G110436 Sobic001G027600--Sobic001G453300 Sobic001G427000 Sobic001G427000 Sobic001G027600--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G027600--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G383900 Sobic001G383900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic001G191000 Sobic001G191000 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic001G527100 Sobic001G527100 Sobic003G328200--Sobic001G527100 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic004G116100 Sobic004G116100 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic002G305700 Sobic002G305700 Sobic004G191200--Sobic002G305700
Octagon: transcription factors


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