Gene annotation
Transcriptome id Sobic.001G484300.1
Synonym Sb01g045330, ATYLMG2, YLMG2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
YGGT family protein, putative, expressed
UniProt C5WVU0
Pfam PF02325
Panther DB PTHR33219 PTHR33219:SF4
NCBI CDD -
KEGG Orthology K02221; YggT family protein
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G21920 : YGGT family protein
RAP-DB (Rice) LOC_Os03g08080.1 : YGGT family protein, putative, expressed
MaizeGDB (Corn) Zm00025a053302 , Zm00025a000901
Brachypodium KQK23341 , KQK23340
Barley HORVU0Hr1G009140.10 , HORVU4Hr1G076380.2 , HORVU0Hr1G009140.8 , HORVU0Hr1G009140.9 , HORVU0Hr1G009140.4 , HORVU0Hr1G009140.5 , HORVU0Hr1G009140.6 , HORVU0Hr1G009140.7 , HORVU0Hr1G009140.1 , HORVU0Hr1G009140.2 , HORVU0Hr1G009140.3
Wheat TraesCS4B02G293700 , TraesCS4D02G292400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
2 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
3 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
4 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
5 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
6 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
7 Sobic.004G317900 expressed protein -
8 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
9 Sobic.007G185100 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
10 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
11 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
12 Sobic.008G030000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@elongation factor P, putative, expressed K02356: elongation factor P
13 Sobic.009G098100 T-complex protein, putative, expressed -
14 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
15 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
16 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
17 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
18 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
20 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6


Gene co-expression network
sample Sobic001G484300 Sobic001G484300 Sobic010G233800 Sobic010G233800 Sobic001G484300--Sobic010G233800 Sobic001G017000 Sobic001G017000 Sobic001G484300--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic001G484300--Sobic001G076500 Sobic001G453300 Sobic001G453300 Sobic001G484300--Sobic001G453300 Sobic003G246400 Sobic003G246400 Sobic001G484300--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G484300--Sobic001G027600 Sobic004G317900 Sobic004G317900 Sobic001G484300--Sobic004G317900 Sobic001G427000 Sobic001G427000 Sobic001G484300--Sobic001G427000 Sobic007G185100 Sobic007G185100 Sobic001G484300--Sobic007G185100 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic010G233800--Sobic001G027600 Sobic010G233800--Sobic007G185100 Sobic004G116100 Sobic004G116100 Sobic010G233800--Sobic004G116100 Sobic003G295800 Sobic003G295800 Sobic001G017000--Sobic003G295800 Sobic004G076000 Sobic004G076000 Sobic001G017000--Sobic004G076000 Sobic001G017000--Sobic004G317900 Sobic001G323801 Sobic001G323801 Sobic001G017000--Sobic001G323801 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic001G017000--Sobic003G246400 Sobic003G328200 Sobic003G328200 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic003G256200 Sobic003G256200 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G391400 Sobic001G391400 Sobic001G453300--Sobic001G391400 Sobic003G246400--Sobic004G317900 Sobic001G411300 Sobic001G411300 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G027600--Sobic001G383900 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic004G317900--Sobic003G246400 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic004G317900--Sobic010G233800 Sobic004G317900--Sobic001G027600 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic007G185100--Sobic004G317900 Sobic010G255600 Sobic010G255600 Sobic007G185100--Sobic010G255600 Sobic007G185100--Sobic010G233800 Sobic010G215500 Sobic010G215500 Sobic007G185100--Sobic010G215500 Sobic007G185100--Sobic003G295800 Sobic007G170800 Sobic007G170800 Sobic007G185100--Sobic007G170800 Sobic007G185100--Sobic003G328200 Sobic008G030000 Sobic008G030000 Sobic007G185100--Sobic008G030000 Sobic007G185100--Sobic004G076000
Octagon: transcription factors


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