Gene annotation
Transcriptome id Sobic.003G246600.1
Synonym Sb03g030290, PSRP6
Functional annotation plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed
UniProt C5XFX1
Pfam -
Panther DB PTHR36798 PTHR36798:SF1
NCBI CDD -
KEGG Orthology K19035; 50S ribosomal protein 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17870 : plastid-specific 50S ribosomal protein 6
RAP-DB (Rice) LOC_Os11g34940.1 : plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a034093
Brachypodium KQJ88225
Barley HORVU7Hr1G055890.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G246600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
2 Sobic.009G179800 - -
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
5 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
6 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
7 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
8 Sobic.006G268200 protochlorophyllide reductase A, chloroplast precursor, putative, expressed K00218: protochlorophyllide reductase
9 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
10 Sobic.005G128100 acyl carrier protein, putative, expressed -
11 Sobic.002G383400 Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed -
12 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
13 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
14 Sobic.004G317900 expressed protein -
15 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
16 Sobic.010G072900 peroxiredoxin, putative, expressed K03564: BCP, PRXQ, thioredoxin-dependent peroxiredoxin
17 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
18 Sobic.004G168500 peroxiredoxin, putative, expressed K03386: PRDX2_4, peroxiredoxin 2/4
19 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
20 Sobic.004G231800 ribosomal protein L29, putative, expressed K02904: RP-L29, large subunit ribosomal protein L29


Gene co-expression network
sample Sobic003G246600 Sobic003G246600 Sobic003G393800 Sobic003G393800 Sobic003G246600--Sobic003G393800 Sobic009G179800 Sobic009G179800 Sobic003G246600--Sobic009G179800 Sobic003G246400 Sobic003G246400 Sobic003G246600--Sobic003G246400 Sobic010G233800 Sobic010G233800 Sobic003G246600--Sobic010G233800 Sobic001G411300 Sobic001G411300 Sobic003G246600--Sobic001G411300 Sobic001G076500 Sobic001G076500 Sobic003G246600--Sobic001G076500 Sobic001G427000 Sobic001G427000 Sobic003G246600--Sobic001G427000 Sobic006G268200 Sobic006G268200 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic001G453300 Sobic001G453300 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G393800--Sobic003G246600 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic009G179800--Sobic003G393800 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300 Sobic004G317900 Sobic004G317900 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G256200 Sobic003G256200 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic004G298100 Sobic004G298100 Sobic003G246400--Sobic004G298100 Sobic001G191000 Sobic001G191000 Sobic003G246400--Sobic001G191000 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic010G233800--Sobic004G116100 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic001G411300--Sobic009G179800 Sobic001G076500--Sobic001G427000 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic006G268200--Sobic003G246600 Sobic006G268200--Sobic009G179800 Sobic006G268200--Sobic003G246400 Sobic006G268200--Sobic001G076500 Sobic006G268200--Sobic010G233800 Sobic006G268200--Sobic001G427000 Sobic006G268200--Sobic003G393800 Sobic006G268200--Sobic001G411300 Sobic006G268200--Sobic001G191000 Sobic001G094200--Sobic003G256200 Sobic001G094200--Sobic003G246400 Sobic001G094200--Sobic010G233800 Sobic004G191200 Sobic004G191200 Sobic001G094200--Sobic004G191200 Sobic001G094200--Sobic001G453300 Sobic001G094200--Sobic001G191000 Sobic001G094200--Sobic001G427000 Sobic001G094200--Sobic001G076500 Sobic001G094200--Sobic001G411300
Octagon: transcription factors


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