Gene annotation
Transcriptome id Sobic.004G231800.1
Synonym Sb04g027550
Functional annotation ribosomal protein L29, putative, expressed
UniProt C5XYD9
Pfam PF00831
Panther DB PTHR10916 PTHR10916:SF0
NCBI CDD KOG3436; 60S ribosomal protein L35
KEGG Orthology K02904; RP-L29, large subunit ribosomal protein L29
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT5G65220 : Ribosomal L29 family protein
RAP-DB (Rice) LOC_Os02g51790.1 : ribosomal protein L29, putative, expressed
MaizeGDB (Corn) Zm00025a022146 , Zm00025a033161
Brachypodium KQK01841
Barley HORVU6Hr1G078290.4 , HORVU6Hr1G078290.2 , HORVU6Hr1G078290.3 , HORVU6Hr1G078290.1
Wheat TraesCS6D02G298300 , TraesCS6B02G349300 , TraesCS6A02G319100
Populus -


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cDNA sequences
Sobic.004G231800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G084200 fasciclin domain containing protein, expressed -
2 Sobic.006G238000 LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
4 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
5 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
6 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
7 Sobic.010G233800 ribosomal protein L24, putative, expressed K02895: RP-L24, MRPL24, large subunit ribosomal protein L24
8 Sobic.002G343700 expressed protein -
9 Sobic.002G020000 wax synthase, putative, expressed -
10 Sobic.001G484300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@YGGT family protein, putative, expressed K02221: YggT family protein
11 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
12 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
13 Sobic.008G144300 cytochrome P450, putative, expressed -
14 Sobic.007G127600 transferase family protein, putative, expressed -
15 Sobic.005G128100 acyl carrier protein, putative, expressed -
16 Sobic.009G179800 - -
17 Sobic.006G268200 protochlorophyllide reductase A, chloroplast precursor, putative, expressed K00218: protochlorophyllide reductase
18 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
19 Sobic.004G353900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
20 Sobic.004G072000 ribosome, putative, expressed -


Gene co-expression network
sample Sobic004G231800 Sobic004G231800 Sobic008G084200 Sobic008G084200 Sobic004G231800--Sobic008G084200 Sobic006G238000 Sobic006G238000 Sobic004G231800--Sobic006G238000 Sobic003G246600 Sobic003G246600 Sobic004G231800--Sobic003G246600 Sobic003G393800 Sobic003G393800 Sobic004G231800--Sobic003G393800 Sobic001G076500 Sobic001G076500 Sobic004G231800--Sobic001G076500 Sobic001G427000 Sobic001G427000 Sobic004G231800--Sobic001G427000 Sobic010G233800 Sobic010G233800 Sobic004G231800--Sobic010G233800 Sobic002G343700 Sobic002G343700 Sobic004G231800--Sobic002G343700 Sobic002G020000 Sobic002G020000 Sobic004G231800--Sobic002G020000 Sobic008G084200--Sobic006G238000 Sobic008G084200--Sobic001G076500 Sobic007G127600 Sobic007G127600 Sobic008G084200--Sobic007G127600 Sobic008G084200--Sobic004G231800 Sobic008G084200--Sobic002G020000 Sobic008G084200--Sobic010G233800 Sobic008G084200--Sobic001G427000 Sobic001G366500 Sobic001G366500 Sobic008G084200--Sobic001G366500 Sobic002G415400 Sobic002G415400 Sobic008G084200--Sobic002G415400 Sobic006G238000--Sobic008G084200 Sobic004G001200 Sobic004G001200 Sobic006G238000--Sobic004G001200 Sobic006G238000--Sobic007G127600 Sobic006G238000--Sobic001G076500 Sobic009G059100 Sobic009G059100 Sobic006G238000--Sobic009G059100 Sobic006G238000--Sobic001G427000 Sobic006G172700 Sobic006G172700 Sobic006G238000--Sobic006G172700 Sobic002G280500 Sobic002G280500 Sobic006G238000--Sobic002G280500 Sobic006G238000--Sobic001G366500 Sobic003G246600--Sobic003G393800 Sobic009G179800 Sobic009G179800 Sobic003G246600--Sobic009G179800 Sobic003G246400 Sobic003G246400 Sobic003G246600--Sobic003G246400 Sobic003G246600--Sobic010G233800 Sobic001G411300 Sobic001G411300 Sobic003G246600--Sobic001G411300 Sobic003G246600--Sobic001G076500 Sobic003G246600--Sobic001G427000 Sobic006G268200 Sobic006G268200 Sobic003G246600--Sobic006G268200 Sobic001G094200 Sobic001G094200 Sobic003G246600--Sobic001G094200 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic001G453300 Sobic001G453300 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G393800--Sobic003G246600 Sobic001G076500--Sobic001G427000 Sobic001G027600 Sobic001G027600 Sobic001G076500--Sobic001G027600 Sobic001G076500--Sobic001G453300 Sobic001G076500--Sobic010G233800 Sobic001G383900 Sobic001G383900 Sobic001G076500--Sobic001G383900 Sobic001G076500--Sobic003G393800 Sobic003G132600 Sobic003G132600 Sobic001G076500--Sobic003G132600 Sobic004G044000 Sobic004G044000 Sobic001G076500--Sobic004G044000 Sobic001G076500--Sobic003G246400 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic003G256200 Sobic003G256200 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G427000--Sobic001G383900 Sobic010G233800--Sobic001G076500 Sobic010G233800--Sobic001G453300 Sobic004G317900 Sobic004G317900 Sobic010G233800--Sobic004G317900 Sobic010G233800--Sobic001G427000 Sobic010G233800--Sobic003G393800 Sobic010G233800--Sobic003G246400 Sobic010G233800--Sobic001G027600 Sobic007G185100 Sobic007G185100 Sobic010G233800--Sobic007G185100 Sobic010G233800--Sobic004G116100 Sobic002G343700--Sobic003G132600 Sobic002G343700--Sobic001G076500 Sobic004G017200 Sobic004G017200 Sobic002G343700--Sobic004G017200 Sobic002G343700--Sobic001G427000 Sobic002G343700--Sobic003G393800 Sobic002G343700--Sobic005G128100 Sobic002G343700--Sobic001G383900 Sobic002G343700--Sobic001G453300 Sobic002G343700--Sobic004G044000 Sobic005G110436 Sobic005G110436 Sobic002G020000--Sobic005G110436 Sobic009G115050 Sobic009G115050 Sobic002G020000--Sobic009G115050 Sobic001G003600 Sobic001G003600 Sobic002G020000--Sobic001G003600 Sobic003G096100 Sobic003G096100 Sobic002G020000--Sobic003G096100 Sobic004G076000 Sobic004G076000 Sobic002G020000--Sobic004G076000 Sobic002G329500 Sobic002G329500 Sobic002G020000--Sobic002G329500 Sobic002G020100 Sobic002G020100 Sobic002G020000--Sobic002G020100 Sobic001G394250 Sobic001G394250 Sobic002G020000--Sobic001G394250 Sobic002G020000--Sobic006G172700
Octagon: transcription factors


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