Gene annotation
Transcriptome id Sobic.004G353900.1
Synonym Sb04g038060
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase/ transition metal ion binding protein, putative, expressed
UniProt C5XWN2
Pfam PF12049
Panther DB PTHR33102:SF13 PTHR33102
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08400 : Protein of unknown function (DUF3531)
RAP-DB (Rice) LOC_Os02g58120.1 : oxidoreductase/ transition metal ion binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032731
Brachypodium KQK02086
Barley HORVU6Hr1G087420.3 , HORVU6Hr1G087420.2 , HORVU6Hr1G087420.1 , HORVU6Hr1G087420.7 , HORVU6Hr1G087420.6 , HORVU6Hr1G087420.5 , HORVU6Hr1G087420.4 , HORVU6Hr1G087420.9 , HORVU6Hr1G087420.8 , HORVU6Hr1G087420.13 , HORVU6Hr1G087420.12 , HORVU6Hr1G087420.11 , HORVU6Hr1G087420.16 , HORVU6Hr1G087420.15 , HORVU6Hr1G087420.14
Wheat TraesCS6D02G355200 , TraesCS6A02G371300 , TraesCS6B02G408300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
3 Sobic.010G208000 ribosomal protein L35, putative, expressed K02916: RP-L35, MRPL35, large subunit ribosomal protein L35
4 Sobic.004G034500 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
5 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
7 Sobic.009G083000 OsRhmbd12 - Putative Rhomboid homologue, expressed -
8 Sobic.001G516800 signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed K12271: SRP43, signal recognition particle 43 kDa protein
9 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
10 Sobic.004G072000 ribosome, putative, expressed -
11 Sobic.004G016700 expressed protein -
12 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.004G231800 ribosomal protein L29, putative, expressed K02904: RP-L29, large subunit ribosomal protein L29
14 Sobic.006G069000 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
15 Sobic.002G406400 PPR repeat domain containing protein, putative, expressed -
16 Sobic.010G258700 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed K15227: arogenate dehydrogenase (NADP+), plant
17 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
18 Sobic.008G084200 fasciclin domain containing protein, expressed -
19 Sobic.001G115800 expressed protein -
20 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic004G353900 Sobic004G353900 Sobic004G066300 Sobic004G066300 Sobic004G353900--Sobic004G066300 Sobic001G030200 Sobic001G030200 Sobic004G353900--Sobic001G030200 Sobic010G208000 Sobic010G208000 Sobic004G353900--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic004G353900--Sobic004G034500 Sobic009G010900 Sobic009G010900 Sobic004G353900--Sobic009G010900 Sobic008G131200 Sobic008G131200 Sobic004G353900--Sobic008G131200 Sobic009G083000 Sobic009G083000 Sobic004G353900--Sobic009G083000 Sobic001G516800 Sobic001G516800 Sobic004G353900--Sobic001G516800 Sobic001G094200 Sobic001G094200 Sobic004G353900--Sobic001G094200 Sobic004G066300--Sobic001G030200 Sobic004G066300--Sobic004G353900 Sobic004G066300--Sobic008G131200 Sobic001G115800 Sobic001G115800 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic004G066300--Sobic010G208000 Sobic004G297800 Sobic004G297800 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000 Sobic001G030200--Sobic010G208000 Sobic002G019900 Sobic002G019900 Sobic001G030200--Sobic002G019900 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic001G030200--Sobic004G353900 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic004G072000 Sobic004G072000 Sobic001G030200--Sobic004G072000 Sobic010G208000--Sobic001G030200 Sobic010G208000--Sobic001G516800 Sobic010G208000--Sobic004G072000 Sobic010G208000--Sobic004G034500 Sobic010G208000--Sobic002G019900 Sobic010G208000--Sobic008G131200 Sobic009G179800 Sobic009G179800 Sobic010G208000--Sobic009G179800 Sobic004G204500 Sobic004G204500 Sobic010G208000--Sobic004G204500 Sobic010G208000--Sobic004G066300 Sobic004G034500--Sobic004G072000 Sobic004G034500--Sobic010G208000 Sobic004G034500--Sobic001G516800 Sobic004G034500--Sobic001G030200 Sobic003G246600 Sobic003G246600 Sobic004G034500--Sobic003G246600 Sobic004G034500--Sobic004G066300 Sobic004G033900 Sobic004G033900 Sobic004G034500--Sobic004G033900 Sobic004G034500--Sobic008G131200 Sobic001G543500 Sobic001G543500 Sobic004G034500--Sobic001G543500 Sobic008G030000 Sobic008G030000 Sobic009G010900--Sobic008G030000 Sobic004G168500 Sobic004G168500 Sobic009G010900--Sobic004G168500 Sobic007G222600 Sobic007G222600 Sobic009G010900--Sobic007G222600 Sobic004G001200 Sobic004G001200 Sobic009G010900--Sobic004G001200 Sobic003G202300 Sobic003G202300 Sobic009G010900--Sobic003G202300 Sobic008G084200 Sobic008G084200 Sobic009G010900--Sobic008G084200 Sobic010G233800 Sobic010G233800 Sobic009G010900--Sobic010G233800 Sobic009G010900--Sobic001G094200 Sobic006G238000 Sobic006G238000 Sobic009G010900--Sobic006G238000 Sobic008G131200--Sobic001G115800 Sobic008G131200--Sobic004G297800 Sobic008G139900 Sobic008G139900 Sobic008G131200--Sobic008G139900 Sobic008G131200--Sobic004G072000 Sobic010G258700 Sobic010G258700 Sobic008G131200--Sobic010G258700 Sobic008G131200--Sobic006G247500 Sobic008G131200--Sobic004G066300 Sobic006G079100 Sobic006G079100 Sobic008G131200--Sobic006G079100 Sobic003G013100 Sobic003G013100 Sobic008G131200--Sobic003G013100 Sobic002G004200 Sobic002G004200 Sobic009G083000--Sobic002G004200 Sobic008G152100 Sobic008G152100 Sobic009G083000--Sobic008G152100 Sobic009G083000--Sobic010G258700 Sobic004G007850 Sobic004G007850 Sobic009G083000--Sobic004G007850 Sobic005G091400 Sobic005G091400 Sobic009G083000--Sobic005G091400 Sobic005G077532 Sobic005G077532 Sobic009G083000--Sobic005G077532 Sobic001G541166 Sobic001G541166 Sobic009G083000--Sobic001G541166 Sobic009G083000--Sobic006G079100 Sobic002G247100 Sobic002G247100 Sobic009G083000--Sobic002G247100 Sobic001G516800--Sobic010G208000 Sobic002G283800 Sobic002G283800 Sobic001G516800--Sobic002G283800 Sobic001G516800--Sobic001G030200 Sobic001G147400 Sobic001G147400 Sobic001G516800--Sobic001G147400 Sobic001G516800--Sobic004G034500 Sobic002G088200 Sobic002G088200 Sobic001G516800--Sobic002G088200 Sobic001G516800--Sobic002G019900 Sobic001G516800--Sobic001G543500 Sobic001G516800--Sobic009G179800 Sobic003G256200 Sobic003G256200 Sobic001G094200--Sobic003G256200 Sobic003G246400 Sobic003G246400 Sobic001G094200--Sobic003G246400 Sobic001G094200--Sobic010G233800 Sobic004G191200 Sobic004G191200 Sobic001G094200--Sobic004G191200 Sobic001G453300 Sobic001G453300 Sobic001G094200--Sobic001G453300 Sobic001G191000 Sobic001G191000 Sobic001G094200--Sobic001G191000 Sobic001G427000 Sobic001G427000 Sobic001G094200--Sobic001G427000 Sobic001G076500 Sobic001G076500 Sobic001G094200--Sobic001G076500 Sobic001G411300 Sobic001G411300 Sobic001G094200--Sobic001G411300
Octagon: transcription factors


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