Gene annotation
Transcriptome id Sobic.001G115800.1
Synonym Sb01g010220
Functional annotation expressed protein
UniProt A0A1B6QII6
Pfam -
Panther DB PTHR36729
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01755 : -
RAP-DB (Rice) LOC_Os03g50530.1 : expressed protein
MaizeGDB (Corn) Zm00025a016963
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
2 Sobic.003G102800 ZOS1-01 - C2H2 zinc finger protein, expressed -
3 Sobic.010G258700 arogenate dehydrogenase 1, chloroplast precursor, putative, expressed K15227: arogenate dehydrogenase (NADP+), plant
4 Sobic.003G120400 expressed protein -
5 Sobic.002G284901 - -
6 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
7 Sobic.001G519300 plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
8 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
9 Sobic.010G073300 expressed protein -
10 Sobic.003G200501 - K11252: histone H2B
11 Sobic.006G065700 DUF677 domain containing protein, putative, expressed -
12 Sobic.001G525000 polygalacturonase, putative, expressed -
13 Sobic.002G210200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
14 Sobic.006G204000 "Ascorbate peroxidase,heme binding / peroxidase (Os)"(PubMedID : 27208977)@Ascorbate peroxidasel heme binding / peroxidase (Os)(PubMedID : 27208977)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
15 Sobic.007G221800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
16 Sobic.007G093400 - -
17 Sobic.002G430200 PSF2 - Putative GINS complex subunit, expressed K10733: GINS2, GINS complex subunit 2
18 Sobic.001G130900 expressed protein -
19 Sobic.002G387100 X8 domain containing protein, expressed -
20 Sobic.003G067500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic001G115800 Sobic001G115800 Sobic004G275500 Sobic004G275500 Sobic001G115800--Sobic004G275500 Sobic003G102800 Sobic003G102800 Sobic001G115800--Sobic003G102800 Sobic010G258700 Sobic010G258700 Sobic001G115800--Sobic010G258700 Sobic003G120400 Sobic003G120400 Sobic001G115800--Sobic003G120400 Sobic002G284901 Sobic002G284901 Sobic001G115800--Sobic002G284901 Sobic001G193400 Sobic001G193400 Sobic001G115800--Sobic001G193400 Sobic001G519300 Sobic001G519300 Sobic001G115800--Sobic001G519300 Sobic002G320900 Sobic002G320900 Sobic001G115800--Sobic002G320900 Sobic010G073300 Sobic010G073300 Sobic001G115800--Sobic010G073300 Sobic004G275500--Sobic001G115800 Sobic007G221800 Sobic007G221800 Sobic004G275500--Sobic007G221800 Sobic004G275500--Sobic001G519300 Sobic001G158000 Sobic001G158000 Sobic004G275500--Sobic001G158000 Sobic007G149600 Sobic007G149600 Sobic004G275500--Sobic007G149600 Sobic007G224600 Sobic007G224600 Sobic004G275500--Sobic007G224600 Sobic004G275500--Sobic001G193400 Sobic004G275500--Sobic002G284901 Sobic006G227800 Sobic006G227800 Sobic004G275500--Sobic006G227800 Sobic003G102800--Sobic001G115800 Sobic003G102800--Sobic010G258700 Sobic003G102800--Sobic004G275500 Sobic003G309600 Sobic003G309600 Sobic003G102800--Sobic003G309600 Sobic003G102800--Sobic001G519300 Sobic003G102800--Sobic002G320900 Sobic003G102800--Sobic003G120400 Sobic003G102800--Sobic002G284901 Sobic007G093400 Sobic007G093400 Sobic003G102800--Sobic007G093400 Sobic010G258700--Sobic001G115800 Sobic010G258700--Sobic003G102800 Sobic006G204000 Sobic006G204000 Sobic010G258700--Sobic006G204000 Sobic008G139900 Sobic008G139900 Sobic010G258700--Sobic008G139900 Sobic010G258700--Sobic003G309600 Sobic010G258700--Sobic004G275500 Sobic005G042700 Sobic005G042700 Sobic010G258700--Sobic005G042700 Sobic010G136601 Sobic010G136601 Sobic010G258700--Sobic010G136601 Sobic010G258700--Sobic003G120400 Sobic001G525000 Sobic001G525000 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G200501 Sobic003G200501 Sobic003G120400--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic003G120400--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic003G120400--Sobic001G130900 Sobic002G430200 Sobic002G430200 Sobic003G120400--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G120400--Sobic003G367401 Sobic002G284901--Sobic002G320900 Sobic002G284901--Sobic003G200501 Sobic002G284901--Sobic002G210200 Sobic002G284901--Sobic003G120400 Sobic002G284901--Sobic001G525000 Sobic002G284901--Sobic007G093400 Sobic006G065700 Sobic006G065700 Sobic002G284901--Sobic006G065700 Sobic003G067500 Sobic003G067500 Sobic002G284901--Sobic003G067500 Sobic002G284901--Sobic002G430200 Sobic003G350100 Sobic003G350100 Sobic001G193400--Sobic003G350100 Sobic003G067300 Sobic003G067300 Sobic001G193400--Sobic003G067300 Sobic004G265400 Sobic004G265400 Sobic001G193400--Sobic004G265400 Sobic001G193400--Sobic007G149600 Sobic001G193400--Sobic003G200501 Sobic001G193400--Sobic003G067500 Sobic001G193400--Sobic002G210200 Sobic002G387100 Sobic002G387100 Sobic001G193400--Sobic002G387100 Sobic001G193400--Sobic002G430200 Sobic001G519300--Sobic007G224600 Sobic001G519300--Sobic002G320900 Sobic001G519300--Sobic002G284901 Sobic001G223400 Sobic001G223400 Sobic001G519300--Sobic001G223400 Sobic001G519300--Sobic006G065700 Sobic001G519300--Sobic007G221800 Sobic001G519300--Sobic002G210200 Sobic001G519300--Sobic003G200501 Sobic001G519300--Sobic003G120400 Sobic002G320900--Sobic002G284901 Sobic002G320900--Sobic001G525000 Sobic002G320900--Sobic003G120400 Sobic002G320900--Sobic002G210200 Sobic002G320900--Sobic003G200501 Sobic002G320900--Sobic007G093400 Sobic002G320900--Sobic006G065700 Sobic001G460800 Sobic001G460800 Sobic002G320900--Sobic001G460800 Sobic002G320900--Sobic003G367401 Sobic010G073300--Sobic002G284901 Sobic010G073300--Sobic003G120400 Sobic010G073300--Sobic001G525000 Sobic010G073300--Sobic002G320900 Sobic010G073300--Sobic002G430200 Sobic010G073300--Sobic001G130900 Sobic010G073300--Sobic003G200501 Sobic010G073300--Sobic002G387100 Sobic010G073300--Sobic002G210200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.