Gene annotation
Transcriptome id Sobic.010G258700.1
Synonym Sb10g029540
Functional annotation arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
UniProt C5Z9D2
Pfam PF02153
Panther DB PTHR11811 PTHR11811:SF30
NCBI CDD -
KEGG Orthology K15227; arogenate dehydrogenase (NADP+), plant
Gene Ontology GO:0008977; prephenate dehydrogenase (NAD+) activity GO:0006571tyrosine biosynthetic process GO:0004665prephenate dehydrogenase (NADP+) activity


Orthologs (automatic annotation)
TAIR AT1G15710 : prephenate dehydrogenase family protein
RAP-DB (Rice) LOC_Os06g49505.1 : arogenate dehydrogenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041753 , Zm00025a018439 , Zm00025a018433
Brachypodium KQK17495 , PNT75563
Barley HORVU7Hr1G095460.1 , HORVU7Hr1G095490.1 , HORVU7Hr1G095490.2 , HORVU7Hr1G095490.3 , HORVU7Hr1G095490.5 , HORVU7Hr1G095550.1 , HORVU7Hr1G095550.2 , HORVU7Hr1G095460.3 , HORVU7Hr1G095460.2 , HORVU7Hr1G095490.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G115800 expressed protein -
2 Sobic.003G102800 ZOS1-01 - C2H2 zinc finger protein, expressed -
3 Sobic.006G204000 "Ascorbate peroxidase,heme binding / peroxidase (Os)"(PubMedID : 27208977)@Ascorbate peroxidasel heme binding / peroxidase (Os)(PubMedID : 27208977)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
4 Sobic.008G139900 expressed protein -
5 Sobic.003G309600 wax synthase, putative, expressed -
6 Sobic.004G275500 helix-loop-helix DNA-binding protein, putative, expressed -
7 Sobic.005G042700 DUF623 domain containing protein, expressed -
8 Sobic.010G136601 - -
9 Sobic.003G120400 expressed protein -
10 Sobic.001G460800 nucleotidyltransferase, putative, expressed -
11 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
12 Sobic.001G004000 avr9/Cf-9 rapidly elicited protein, putative, expressed -
13 Sobic.002G285800 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR52 - Auxin-responsive SAUR gene family member, expressed -
14 Sobic.001G223400 glucosyltransferase, putative, expressed -
15 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
16 Sobic.003G229150 - -
17 Sobic.003G099500 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
18 Sobic.002G004100 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
19 Sobic.002G320900 patatin-like phospholipase family protein, expressed -
20 Sobic.001G525000 polygalacturonase, putative, expressed -


Gene co-expression network
sample Sobic010G258700 Sobic010G258700 Sobic001G115800 Sobic001G115800 Sobic010G258700--Sobic001G115800 Sobic003G102800 Sobic003G102800 Sobic010G258700--Sobic003G102800 Sobic006G204000 Sobic006G204000 Sobic010G258700--Sobic006G204000 Sobic008G139900 Sobic008G139900 Sobic010G258700--Sobic008G139900 Sobic003G309600 Sobic003G309600 Sobic010G258700--Sobic003G309600 Sobic004G275500 Sobic004G275500 Sobic010G258700--Sobic004G275500 Sobic005G042700 Sobic005G042700 Sobic010G258700--Sobic005G042700 Sobic010G136601 Sobic010G136601 Sobic010G258700--Sobic010G136601 Sobic003G120400 Sobic003G120400 Sobic010G258700--Sobic003G120400 Sobic001G115800--Sobic004G275500 Sobic001G115800--Sobic003G102800 Sobic001G115800--Sobic010G258700 Sobic001G115800--Sobic003G120400 Sobic002G284901 Sobic002G284901 Sobic001G115800--Sobic002G284901 Sobic001G193400 Sobic001G193400 Sobic001G115800--Sobic001G193400 Sobic001G519300 Sobic001G519300 Sobic001G115800--Sobic001G519300 Sobic002G320900 Sobic002G320900 Sobic001G115800--Sobic002G320900 Sobic010G073300 Sobic010G073300 Sobic001G115800--Sobic010G073300 Sobic003G102800--Sobic001G115800 Sobic003G102800--Sobic010G258700 Sobic003G102800--Sobic004G275500 Sobic003G102800--Sobic003G309600 Sobic003G102800--Sobic001G519300 Sobic003G102800--Sobic002G320900 Sobic003G102800--Sobic003G120400 Sobic003G102800--Sobic002G284901 Sobic007G093400 Sobic007G093400 Sobic003G102800--Sobic007G093400 Sobic006G204000--Sobic003G309600 Sobic006G204000--Sobic001G115800 Sobic006G204000--Sobic010G258700 Sobic006G204000--Sobic008G139900 Sobic006G204000--Sobic003G120400 Sobic003G099500 Sobic003G099500 Sobic006G204000--Sobic003G099500 Sobic006G204000--Sobic002G284901 Sobic001G460800 Sobic001G460800 Sobic006G204000--Sobic001G460800 Sobic006G204000--Sobic002G320900 Sobic004G330400 Sobic004G330400 Sobic008G139900--Sobic004G330400 Sobic001G493800 Sobic001G493800 Sobic008G139900--Sobic001G493800 SobicK044200 SobicK044200 Sobic008G139900--SobicK044200 Sobic008G028500 Sobic008G028500 Sobic008G139900--Sobic008G028500 Sobic003G229150 Sobic003G229150 Sobic008G139900--Sobic003G229150 Sobic005G102100 Sobic005G102100 Sobic008G139900--Sobic005G102100 Sobic002G206200 Sobic002G206200 Sobic008G139900--Sobic002G206200 Sobic008G139900--Sobic006G204000 Sobic003G396900 Sobic003G396900 Sobic008G139900--Sobic003G396900 Sobic002G218200 Sobic002G218200 Sobic003G309600--Sobic002G218200 Sobic001G410800 Sobic001G410800 Sobic003G309600--Sobic001G410800 Sobic004G357033 Sobic004G357033 Sobic003G309600--Sobic004G357033 Sobic001G220200 Sobic001G220200 Sobic003G309600--Sobic001G220200 Sobic003G309600--Sobic006G204000 Sobic010G096801 Sobic010G096801 Sobic003G309600--Sobic010G096801 Sobic001G139600 Sobic001G139600 Sobic003G309600--Sobic001G139600 Sobic003G309600--Sobic001G519300 Sobic001G535601 Sobic001G535601 Sobic003G309600--Sobic001G535601 Sobic004G275500--Sobic001G115800 Sobic007G221800 Sobic007G221800 Sobic004G275500--Sobic007G221800 Sobic004G275500--Sobic001G519300 Sobic001G158000 Sobic001G158000 Sobic004G275500--Sobic001G158000 Sobic007G149600 Sobic007G149600 Sobic004G275500--Sobic007G149600 Sobic007G224600 Sobic007G224600 Sobic004G275500--Sobic007G224600 Sobic004G275500--Sobic001G193400 Sobic004G275500--Sobic002G284901 Sobic006G227800 Sobic006G227800 Sobic004G275500--Sobic006G227800 Sobic007G013100 Sobic007G013100 Sobic005G042700--Sobic007G013100 Sobic002G004100 Sobic002G004100 Sobic005G042700--Sobic002G004100 Sobic005G042700--Sobic003G099500 Sobic005G042700--Sobic001G460800 Sobic003G167825 Sobic003G167825 Sobic005G042700--Sobic003G167825 Sobic005G042700--Sobic001G493800 Sobic009G085600 Sobic009G085600 Sobic005G042700--Sobic009G085600 Sobic007G111600 Sobic007G111600 Sobic005G042700--Sobic007G111600 Sobic010G074980 Sobic010G074980 Sobic005G042700--Sobic010G074980 Sobic001G223400 Sobic001G223400 Sobic010G136601--Sobic001G223400 Sobic002G285800 Sobic002G285800 Sobic010G136601--Sobic002G285800 Sobic010G136601--Sobic001G460800 Sobic003G427500 Sobic003G427500 Sobic010G136601--Sobic003G427500 Sobic010G136601--Sobic004G357033 Sobic010G136601--Sobic002G320900 Sobic010G136601--Sobic003G167825 Sobic006G065700 Sobic006G065700 Sobic010G136601--Sobic006G065700 Sobic010G136601--Sobic007G093400 Sobic001G525000 Sobic001G525000 Sobic003G120400--Sobic001G525000 Sobic003G120400--Sobic002G320900 Sobic003G120400--Sobic007G093400 Sobic003G120400--Sobic002G284901 Sobic003G200501 Sobic003G200501 Sobic003G120400--Sobic003G200501 Sobic002G210200 Sobic002G210200 Sobic003G120400--Sobic002G210200 Sobic001G130900 Sobic001G130900 Sobic003G120400--Sobic001G130900 Sobic002G430200 Sobic002G430200 Sobic003G120400--Sobic002G430200 Sobic003G367401 Sobic003G367401 Sobic003G120400--Sobic003G367401
Octagon: transcription factors


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