Gene annotation
| Transcriptome id |
Sobic.004G275500.1 |
|---|
| Synonym |
Sb04g031250 |
|---|
| Functional annotation |
helix-loop-helix DNA-binding protein, putative, expressed |
|---|
| UniProt |
C5Y0S0 |
|---|
| Pfam |
PF00010 |
|---|
| Panther DB |
PTHR11969
PTHR11969:SF27 |
|---|
| NCBI CDD |
- |
|---|
| KEGG Orthology |
- |
|---|
| Gene Ontology |
- |
|---|
Orthologs (automatic annotation)
| TAIR |
AT3G24140 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|---|
| RAP-DB (Rice) |
LOC_Os02g46560.1 : helix-loop-helix DNA-binding protein, putative, expressed |
|---|
| MaizeGDB (Corn) |
Zm00025a036738
, Zm00025a021600
, Zm00025a056723
, Zm00025a032372 |
|---|
| Brachypodium |
KQK23205
, KQK00838
, KQK05832
, KQJ84300 |
|---|
| Barley |
HORVU6Hr1G067000.2
, HORVU6Hr1G067000.1
, HORVU2Hr1G105960.2
, HORVU2Hr1G105960.1
, HORVU6Hr1G067000.5
, HORVU6Hr1G067000.4
, HORVU6Hr1G067000.3
, HORVU1Hr1G071330.8
, HORVU1Hr1G071330.1
, HORVU1Hr1G071330.3
, HORVU4Hr1G084850.1
, HORVU4Hr1G084850.3
, HORVU4Hr1G084850.2
, HORVU4Hr1G084850.5
, HORVU4Hr1G084850.4
, HORVU2Hr1G106030.1
, HORVU2Hr1G106030.2
, HORVU1Hr1G071330.2
, HORVU1Hr1G071330.5
, HORVU1Hr1G071330.6
, HORVU1Hr1G071330.4
, HORVU1Hr1G071330.7 |
|---|
| Wheat |
TraesCS6B02G291200
, TraesCS4B02G304500
, TraesCS1A02G290800
, TraesCS1A02G290800
, TraesCS2D02G448000
, TraesCS6A02G264200
, TraesCS4D02G302700
, TraesCS1B02G300100
, TraesCS2B02G469700
, TraesCS6D02G250700
, TraesCS2A02G448800
, TraesCS4B02G347100
, TraesCS4A02G404700
, TraesCS4D02G342000
, TraesCS1D02G289400
, TraesCS1D02G289400
, TraesCS2B02G469800 |
|---|
| Populus |
- |
|---|
JBrowse
Expression pattern by RNA-Seq analysis
| FPKM plot |
 |
Find similar expressed genes
| Top 20 genes with similar expressed profiles |
 |
| Rank |
Gene |
Function |
KEGG orthology |
|---|
| 1 |
Sobic.001G115800 |
expressed protein |
- |
| 2 |
Sobic.007G221800 |
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
K11252: histone H2B |
| 3 |
Sobic.001G519300 |
plasma membrane ATPase, putative, expressed |
K01535: PMA1, H+-transporting ATPase |
| 4 |
Sobic.001G158000 |
selT/selW/selH selenoprotein domain containing protein, expressed |
- |
| 5 |
Sobic.007G149600 |
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
K11252: histone H2B |
| 6 |
Sobic.007G224600 |
- |
- |
| 7 |
Sobic.001G193400 |
DUF538 domain containing protein, putative, expressed |
- |
| 8 |
Sobic.002G284901 |
- |
- |
| 9 |
Sobic.006G227800 |
leucoanthocyanidin reductase, putative, expressed |
K08695: anthocyanidin reductase |
| 10 |
Sobic.003G200501 |
- |
K11252: histone H2B |
| 11 |
Sobic.002G320900 |
patatin-like phospholipase family protein, expressed |
- |
| 12 |
Sobic.002G210200 |
SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
K11252: histone H2B |
| 13 |
Sobic.004G265400 |
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
K11252: histone H2B |
| 14 |
Sobic.003G120400 |
expressed protein |
- |
| 15 |
Sobic.006G065700 |
DUF677 domain containing protein, putative, expressed |
- |
| 16 |
Sobic.003G067500 |
Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
K11252: histone H2B |
| 17 |
Sobic.001G223400 |
glucosyltransferase, putative, expressed |
- |
| 18 |
Sobic.004G192700 |
dynein light chain type 1 family protein, putative, expressed |
K10418: dynein light chain LC8-type |
| 19 |
Sobic.001G130900 |
expressed protein |
- |
| 20 |
Sobic.010G073300 |
expressed protein |
- |
Gene co-expression network
|
|
Octagon: transcription factors
