Gene annotation
Transcriptome id Sobic.006G069000.1
Synonym FD3, Sb06g015570, ATFD3
Functional annotation 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5YFU9
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF96
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G27510 : ferredoxin 3
RAP-DB (Rice) LOC_Os04g33630.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055998 , Zm00025a011525
Brachypodium KQJ82507
Barley HORVU2Hr1G072880.1 , HORVU2Hr1G072880.2
Wheat -
Populus -


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cDNA sequences
Sobic.006G069000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G071300 pectinesterase, putative, expressed -
2 Sobic.004G353900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase/ transition metal ion binding protein, putative, expressed -
3 Sobic.004G066300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G030200 transcription termination factor nusG family protein, expressed -
5 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.003G100200 TOO MANY MOUTHS precursor, putative, expressed -
7 Sobic.004G297800 transferase family protein, putative, expressed -
8 Sobic.004G001200 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.004G222300 DEF7 - Defensin and Defensin-like DEFL family, expressed -
10 Sobic.006G079100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
11 Sobic.008G131200 DUF538 domain containing protein, putative, expressed -
12 Sobic.008G084200 fasciclin domain containing protein, expressed -
13 Sobic.006G238000 LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.004G016700 expressed protein -
15 Sobic.002G019900 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.002G280500 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
18 Sobic.004G231800 ribosomal protein L29, putative, expressed K02904: RP-L29, large subunit ribosomal protein L29
19 Sobic.001G164500 MYB family transcription factor, putative, expressed -
20 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -


Gene co-expression network
sample Sobic006G069000 Sobic006G069000 Sobic010G071300 Sobic010G071300 Sobic006G069000--Sobic010G071300 Sobic004G353900 Sobic004G353900 Sobic006G069000--Sobic004G353900 Sobic004G066300 Sobic004G066300 Sobic006G069000--Sobic004G066300 Sobic001G030200 Sobic001G030200 Sobic006G069000--Sobic001G030200 Sobic009G010900 Sobic009G010900 Sobic006G069000--Sobic009G010900 Sobic003G100200 Sobic003G100200 Sobic006G069000--Sobic003G100200 Sobic004G297800 Sobic004G297800 Sobic006G069000--Sobic004G297800 Sobic004G001200 Sobic004G001200 Sobic006G069000--Sobic004G001200 Sobic004G222300 Sobic004G222300 Sobic006G069000--Sobic004G222300 Sobic010G071300--Sobic004G222300 Sobic010G071300--Sobic006G069000 Sobic005G047900 Sobic005G047900 Sobic010G071300--Sobic005G047900 Sobic003G148400 Sobic003G148400 Sobic010G071300--Sobic003G148400 Sobic004G215100 Sobic004G215100 Sobic010G071300--Sobic004G215100 Sobic001G164500 Sobic001G164500 Sobic010G071300--Sobic001G164500 Sobic001G379100 Sobic001G379100 Sobic010G071300--Sobic001G379100 Sobic002G280500 Sobic002G280500 Sobic010G071300--Sobic002G280500 Sobic003G055800 Sobic003G055800 Sobic010G071300--Sobic003G055800 Sobic004G353900--Sobic004G066300 Sobic004G353900--Sobic001G030200 Sobic010G208000 Sobic010G208000 Sobic004G353900--Sobic010G208000 Sobic004G034500 Sobic004G034500 Sobic004G353900--Sobic004G034500 Sobic004G353900--Sobic009G010900 Sobic008G131200 Sobic008G131200 Sobic004G353900--Sobic008G131200 Sobic009G083000 Sobic009G083000 Sobic004G353900--Sobic009G083000 Sobic001G516800 Sobic001G516800 Sobic004G353900--Sobic001G516800 Sobic001G094200 Sobic001G094200 Sobic004G353900--Sobic001G094200 Sobic004G066300--Sobic001G030200 Sobic004G066300--Sobic004G353900 Sobic004G066300--Sobic008G131200 Sobic001G115800 Sobic001G115800 Sobic004G066300--Sobic001G115800 SobicK044200 SobicK044200 Sobic004G066300--SobicK044200 Sobic004G066300--Sobic010G208000 Sobic004G066300--Sobic004G297800 Sobic006G247500 Sobic006G247500 Sobic004G066300--Sobic006G247500 Sobic009G154000 Sobic009G154000 Sobic004G066300--Sobic009G154000 Sobic001G030200--Sobic010G208000 Sobic002G019900 Sobic002G019900 Sobic001G030200--Sobic002G019900 Sobic001G030200--Sobic004G066300 Sobic001G030200--Sobic001G516800 Sobic001G030200--Sobic004G353900 Sobic001G030200--Sobic008G131200 Sobic004G016700 Sobic004G016700 Sobic001G030200--Sobic004G016700 Sobic001G030200--Sobic004G034500 Sobic004G072000 Sobic004G072000 Sobic001G030200--Sobic004G072000 Sobic008G030000 Sobic008G030000 Sobic009G010900--Sobic008G030000 Sobic004G168500 Sobic004G168500 Sobic009G010900--Sobic004G168500 Sobic007G222600 Sobic007G222600 Sobic009G010900--Sobic007G222600 Sobic009G010900--Sobic004G001200 Sobic003G202300 Sobic003G202300 Sobic009G010900--Sobic003G202300 Sobic008G084200 Sobic008G084200 Sobic009G010900--Sobic008G084200 Sobic010G233800 Sobic010G233800 Sobic009G010900--Sobic010G233800 Sobic009G010900--Sobic001G094200 Sobic006G238000 Sobic006G238000 Sobic009G010900--Sobic006G238000 Sobic006G163650 Sobic006G163650 Sobic003G100200--Sobic006G163650 Sobic004G113900 Sobic004G113900 Sobic003G100200--Sobic004G113900 Sobic002G035500 Sobic002G035500 Sobic003G100200--Sobic002G035500 Sobic010G209800 Sobic010G209800 Sobic003G100200--Sobic010G209800 Sobic003G359200 Sobic003G359200 Sobic003G100200--Sobic003G359200 Sobic009G157000 Sobic009G157000 Sobic003G100200--Sobic009G157000 Sobic009G254400 Sobic009G254400 Sobic003G100200--Sobic009G254400 Sobic005G131900 Sobic005G131900 Sobic003G100200--Sobic005G131900 Sobic003G406500 Sobic003G406500 Sobic003G100200--Sobic003G406500 Sobic006G079100 Sobic006G079100 Sobic004G297800--Sobic006G079100 Sobic004G297800--Sobic008G131200 Sobic004G297800--Sobic006G247500 Sobic004G297800--SobicK044200 Sobic010G014200 Sobic010G014200 Sobic004G297800--Sobic010G014200 Sobic004G128600 Sobic004G128600 Sobic004G297800--Sobic004G128600 Sobic006G280300 Sobic006G280300 Sobic004G297800--Sobic006G280300 Sobic001G362800 Sobic001G362800 Sobic004G297800--Sobic001G362800 Sobic004G297800--Sobic001G115800 Sobic004G001200--Sobic006G238000 Sobic006G001400 Sobic006G001400 Sobic004G001200--Sobic006G001400 Sobic009G059100 Sobic009G059100 Sobic004G001200--Sobic009G059100 Sobic004G291500 Sobic004G291500 Sobic004G001200--Sobic004G291500 Sobic005G020200 Sobic005G020200 Sobic004G001200--Sobic005G020200 Sobic006G172700 Sobic006G172700 Sobic004G001200--Sobic006G172700 Sobic005G196500 Sobic005G196500 Sobic004G001200--Sobic005G196500 Sobic004G300800 Sobic004G300800 Sobic004G001200--Sobic004G300800 Sobic002G020100 Sobic002G020100 Sobic004G001200--Sobic002G020100 Sobic004G222300--Sobic010G071300 Sobic005G102800 Sobic005G102800 Sobic004G222300--Sobic005G102800 Sobic004G222300--Sobic005G047900 Sobic004G269100 Sobic004G269100 Sobic004G222300--Sobic004G269100 Sobic001G448000 Sobic001G448000 Sobic004G222300--Sobic001G448000 Sobic004G115000 Sobic004G115000 Sobic004G222300--Sobic004G115000 Sobic003G250000 Sobic003G250000 Sobic004G222300--Sobic003G250000 Sobic004G222300--Sobic003G148400 Sobic004G222300--Sobic004G215100
Octagon: transcription factors


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