Gene annotation
Transcriptome id Sobic.001G478100.1
Synonym Sb01g044790
Functional annotation aspartic proteinase nepenthesin precursor, putative, expressed
UniProt A0A1B6QQ39
Pfam PF14543 PF14541
Panther DB PTHR13683 PTHR13683:SF259
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G09750 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os03g08790.1 : aspartic proteinase nepenthesin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a000996
Brachypodium KQK23228
Barley HORVU4Hr1G078010.2 , HORVU4Hr1G078010.3 , HORVU4Hr1G078010.1 , HORVU5Hr1G072370.1
Wheat TraesCS5A02G259400 , TraesCS5A02G259400 , TraesCS5D02G267300 , TraesCS5B02G258200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389600 expressed protein -
2 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
3 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
4 Sobic.002G403000 eukaryotic aspartyl protease domain containing protein, expressed -
5 Sobic.010G143300 carboxyl-terminal peptidase, putative, expressed -
6 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
8 Sobic.007G142300 expressed protein -
9 Sobic.010G165100 expressed protein -
10 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.004G291500 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.009G134000 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.005G209900 expressed protein -
14 Sobic.002G246000 expressed protein -
15 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
16 Sobic.005G147800 Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
18 Sobic.009G154100 expressed protein -
19 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
20 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic001G478100 Sobic001G478100 Sobic001G389600 Sobic001G389600 Sobic001G478100--Sobic001G389600 Sobic006G233600 Sobic006G233600 Sobic001G478100--Sobic006G233600 Sobic010G107200 Sobic010G107200 Sobic001G478100--Sobic010G107200 Sobic002G403000 Sobic002G403000 Sobic001G478100--Sobic002G403000 Sobic010G143300 Sobic010G143300 Sobic001G478100--Sobic010G143300 Sobic006G032800 Sobic006G032800 Sobic001G478100--Sobic006G032800 Sobic005G196500 Sobic005G196500 Sobic001G478100--Sobic005G196500 Sobic007G142300 Sobic007G142300 Sobic001G478100--Sobic007G142300 Sobic010G165100 Sobic010G165100 Sobic001G478100--Sobic010G165100 Sobic001G389600--Sobic002G403000 Sobic001G389600--Sobic010G165100 Sobic001G389600--Sobic001G478100 Sobic002G045200 Sobic002G045200 Sobic001G389600--Sobic002G045200 Sobic001G389600--Sobic010G107200 Sobic002G142500 Sobic002G142500 Sobic001G389600--Sobic002G142500 Sobic002G246000 Sobic002G246000 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic001G389600--Sobic006G032800 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic006G233600--Sobic001G478100 Sobic005G209900 Sobic005G209900 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G001400 Sobic006G001400 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic009G154100 Sobic009G154100 Sobic006G233600--Sobic009G154100 Sobic007G012800 Sobic007G012800 Sobic006G233600--Sobic007G012800 Sobic010G107200--Sobic005G209900 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic010G107200--Sobic007G142300 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic005G147800 Sobic005G147800 Sobic010G107200--Sobic005G147800 Sobic002G403000--Sobic001G389600 Sobic002G403000--Sobic001G478100 Sobic002G403000--Sobic002G428000 Sobic002G403000--Sobic010G165100 Sobic002G403000--Sobic002G045200 Sobic008G110400 Sobic008G110400 Sobic002G403000--Sobic008G110400 Sobic002G403000--Sobic002G246000 Sobic003G277200 Sobic003G277200 Sobic002G403000--Sobic003G277200 Sobic002G403000--Sobic010G107200 Sobic009G134000 Sobic009G134000 Sobic010G143300--Sobic009G134000 Sobic010G143300--Sobic001G478100 Sobic010G143300--Sobic006G233600 Sobic010G143300--Sobic005G196500 Sobic010G143300--Sobic010G107200 Sobic010G143300--Sobic006G032800 Sobic006G178800 Sobic006G178800 Sobic010G143300--Sobic006G178800 Sobic003G333000 Sobic003G333000 Sobic010G143300--Sobic003G333000 Sobic010G143300--Sobic007G142300 Sobic006G044200 Sobic006G044200 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic005G188500 Sobic005G188500 Sobic006G032800--Sobic005G188500 Sobic006G032800--Sobic006G233600 Sobic003G018700 Sobic003G018700 Sobic006G032800--Sobic003G018700 Sobic006G032800--Sobic009G154100 Sobic006G032800--Sobic001G389600 Sobic006G032800--Sobic001G478100 Sobic006G032800--Sobic007G012800 Sobic005G196500--Sobic006G001400 Sobic005G196500--Sobic006G233600 Sobic005G196500--Sobic005G209900 Sobic005G196500--Sobic010G107200 Sobic005G227050 Sobic005G227050 Sobic005G196500--Sobic005G227050 Sobic005G196500--Sobic007G142300 Sobic004G001200 Sobic004G001200 Sobic005G196500--Sobic004G001200 Sobic005G196500--Sobic003G333000 Sobic004G291500 Sobic004G291500 Sobic005G196500--Sobic004G291500 Sobic007G142300--Sobic005G147800 Sobic007G142300--Sobic010G107200 Sobic002G397400 Sobic002G397400 Sobic007G142300--Sobic002G397400 Sobic007G142300--Sobic005G209900 Sobic001G265900 Sobic001G265900 Sobic007G142300--Sobic001G265900 Sobic007G142300--Sobic005G196500 Sobic007G142300--Sobic006G233600 Sobic010G124200 Sobic010G124200 Sobic007G142300--Sobic010G124200 Sobic007G142300--Sobic006G032800 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic010G165100--Sobic006G274866 Sobic010G165100--Sobic002G403000 Sobic010G165100--Sobic006G032800 Sobic002G311000 Sobic002G311000 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.