Gene annotation
Transcriptome id Sobic.002G164700.1
Synonym WIP6, DOT5, Sb02g020840
Functional annotation ZOS9-04 - C2H2 zinc finger protein, expressed
UniProt C5X919
Pfam -
Panther DB PTHR10593 PTHR10593:SF41
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13290 : C2H2-like zinc finger protein
RAP-DB (Rice) LOC_Os09g13680.1 : ZOS9-04 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a037244 , Zm00025a046409 , Zm00025a033793 , Zm00025a051571 , Zm00025a043815 , Zm00025a026771 , Zm00025a013702 , Zm00025a047434 , Zm00025a005046 , Zm00025a042128
Brachypodium KQK10684 , KQK17682 , KQJ89685 , KQK06003 , KQJ90731 , KQJ89791
Barley -
Wheat TraesCS5A02G179800 , TraesCS1A02G276800 , TraesCS5B02G177600 , TraesCS7B02G304000 , TraesCS7D02G242600 , TraesCS5D02G179700 , TraesCS3D02G364800 , TraesCS3B02G404000 , TraesCS5A02G263200 , TraesCS1D02G276200 , TraesCS5D02G270700 , TraesCS5A02G175400 , TraesCS3A02G371700 , TraesCS7A02G404400 , TraesCS5B02G262400 , TraesCS7D02G397800 , TraesCS5D02G184400 , TraesCS1B02G285900 , TraesCS7B02G147400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G241800 receptor kinase, putative, expressed -
2 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
3 Sobic.006G032800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolase family 10 protein, putative, expressed -
4 Sobic.003G291000 protein kinase family protein, putative, expressed -
5 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.010G165100 expressed protein -
7 Sobic.009G154100 expressed protein -
8 Sobic.001G389600 expressed protein -
9 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
10 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
11 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
12 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
13 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
15 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
16 Sobic.010G096200 expressed protein -
17 Sobic.002G045200 protein kinase, putative, expressed -
18 Sobic.002G142500 expressed protein -
19 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
20 Sobic.004G164700 expressed protein -


Gene co-expression network
sample Sobic002G164700 Sobic002G164700 Sobic006G241800 Sobic006G241800 Sobic002G164700--Sobic006G241800 Sobic003G018700 Sobic003G018700 Sobic002G164700--Sobic003G018700 Sobic006G032800 Sobic006G032800 Sobic002G164700--Sobic006G032800 Sobic003G291000 Sobic003G291000 Sobic002G164700--Sobic003G291000 Sobic010G107200 Sobic010G107200 Sobic002G164700--Sobic010G107200 Sobic010G165100 Sobic010G165100 Sobic002G164700--Sobic010G165100 Sobic009G154100 Sobic009G154100 Sobic002G164700--Sobic009G154100 Sobic001G389600 Sobic001G389600 Sobic002G164700--Sobic001G389600 Sobic006G233600 Sobic006G233600 Sobic002G164700--Sobic006G233600 Sobic006G241800--Sobic003G291000 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic001G381100 Sobic001G381100 Sobic006G241800--Sobic001G381100 Sobic001G074100 Sobic001G074100 Sobic006G241800--Sobic001G074100 Sobic003G018700--Sobic010G020600 Sobic003G018700--Sobic006G241800 Sobic004G248100 Sobic004G248100 Sobic003G018700--Sobic004G248100 Sobic003G018700--Sobic002G164700 Sobic003G018700--Sobic001G381100 Sobic003G018700--Sobic004G317200 Sobic003G018700--Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic003G018700--Sobic006G044200 Sobic003G018700--Sobic001G074100 Sobic006G032800--Sobic006G044200 Sobic006G032800--Sobic010G107200 Sobic005G188500 Sobic005G188500 Sobic006G032800--Sobic005G188500 Sobic006G032800--Sobic006G233600 Sobic006G032800--Sobic003G018700 Sobic006G032800--Sobic009G154100 Sobic006G032800--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic006G032800--Sobic001G478100 Sobic007G012800 Sobic007G012800 Sobic006G032800--Sobic007G012800 Sobic003G291000--Sobic006G241800 Sobic003G291000--Sobic002G311000 Sobic001G461800 Sobic001G461800 Sobic003G291000--Sobic001G461800 Sobic003G291000--Sobic001G074100 Sobic002G045200 Sobic002G045200 Sobic003G291000--Sobic002G045200 Sobic003G078300 Sobic003G078300 Sobic003G291000--Sobic003G078300 Sobic010G211800 Sobic010G211800 Sobic003G291000--Sobic010G211800 Sobic003G291000--Sobic002G164700 Sobic003G250000 Sobic003G250000 Sobic003G291000--Sobic003G250000 Sobic005G209900 Sobic005G209900 Sobic010G107200--Sobic005G209900 Sobic005G196500 Sobic005G196500 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic007G142300 Sobic007G142300 Sobic010G107200--Sobic007G142300 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic005G147800 Sobic005G147800 Sobic010G107200--Sobic005G147800 Sobic002G246000 Sobic002G246000 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic002G142500 Sobic002G142500 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic010G165100--Sobic006G274866 Sobic002G403000 Sobic002G403000 Sobic010G165100--Sobic002G403000 Sobic010G165100--Sobic006G032800 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic009G154100--Sobic007G012800 Sobic002G179700 Sobic002G179700 Sobic009G154100--Sobic002G179700 Sobic007G189400 Sobic007G189400 Sobic009G154100--Sobic007G189400 Sobic005G227050 Sobic005G227050 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic009G154100--Sobic006G032800 Sobic001G389600--Sobic002G403000 Sobic001G389600--Sobic010G165100 Sobic001G389600--Sobic001G478100 Sobic001G389600--Sobic002G045200 Sobic001G389600--Sobic010G107200 Sobic001G389600--Sobic002G142500 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic001G389600--Sobic006G032800 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G001400 Sobic006G001400 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic006G233600--Sobic009G154100 Sobic006G233600--Sobic007G012800
Octagon: transcription factors


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