Gene annotation
Transcriptome id Sobic.002G045200.2,Sobic.002G045200.1
Synonym Sb02g003860
Functional annotation protein kinase, putative, expressed
UniProt A0A1B6Q967
Pfam PF07714
Panther DB PTHR27003 PTHR27003:SF88
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G03770 : Leucine-rich repeat protein kinase family protein
RAP-DB (Rice) LOC_Os07g07230.2,LOC_Os07g07230.1 : protein kinase, putative, expressed
MaizeGDB (Corn) Zm00025a008520 , Zm00025a045095
Brachypodium PNT76977 , PNT76978 , KQK20737 , KQK20736
Barley HORVU5Hr1G104080.13 , HORVU5Hr1G104080.16 , HORVU5Hr1G104080.17 , HORVU5Hr1G104080.14 , HORVU5Hr1G104080.18 , HORVU5Hr1G104080.8 , HORVU5Hr1G104080.2 , HORVU5Hr1G104080.5 , HORVU5Hr1G104080.6 , HORVU5Hr1G104080.7 , HORVU5Hr1G104080.23 , HORVU5Hr1G104080.22 , HORVU5Hr1G104080.21 , HORVU5Hr1G104080.20
Wheat TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2D02G248200 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS2B02G270100 , TraesCS5D02G437000 , TraesCS2A02G243400 , TraesCS2A02G243400 , TraesCS5A02G428900 , TraesCS2A02G243400 , TraesCS2A02G243400 , TraesCS2A02G243400 , TraesCS2A02G243400 , TraesCS2A02G243400 , TraesCS2A02G243400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389600 expressed protein -
2 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
3 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
4 Sobic.010G165100 expressed protein -
5 Sobic.006G241800 receptor kinase, putative, expressed -
6 Sobic.001G522300 leucine-rich repeat transmembrane protein kinase, putative, expressed -
7 Sobic.002G362700 zinc finger family protein, putative, expressed -
8 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
9 Sobic.002G142500 expressed protein -
10 Sobic.002G403000 eukaryotic aspartyl protease domain containing protein, expressed -
11 Sobic.002G246000 expressed protein -
12 Sobic.003G291000 protein kinase family protein, putative, expressed -
13 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
14 Sobic.003G031700 protein kinase family protein, putative, expressed -
15 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
16 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
17 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
18 Sobic.004G164700 expressed protein -
19 Sobic.010G211700 - -
20 Sobic.006G274866 - -


Gene co-expression network
sample Sobic002G045200 Sobic002G045200 Sobic001G389600 Sobic001G389600 Sobic002G045200--Sobic001G389600 Sobic010G211800 Sobic010G211800 Sobic002G045200--Sobic010G211800 Sobic001G074100 Sobic001G074100 Sobic002G045200--Sobic001G074100 Sobic010G165100 Sobic010G165100 Sobic002G045200--Sobic010G165100 Sobic006G241800 Sobic006G241800 Sobic002G045200--Sobic006G241800 Sobic001G522300 Sobic001G522300 Sobic002G045200--Sobic001G522300 Sobic002G362700 Sobic002G362700 Sobic002G045200--Sobic002G362700 Sobic002G311000 Sobic002G311000 Sobic002G045200--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic002G045200--Sobic002G142500 Sobic002G403000 Sobic002G403000 Sobic001G389600--Sobic002G403000 Sobic001G389600--Sobic010G165100 Sobic001G478100 Sobic001G478100 Sobic001G389600--Sobic001G478100 Sobic001G389600--Sobic002G045200 Sobic010G107200 Sobic010G107200 Sobic001G389600--Sobic010G107200 Sobic001G389600--Sobic002G142500 Sobic002G246000 Sobic002G246000 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic006G032800 Sobic006G032800 Sobic001G389600--Sobic006G032800 Sobic010G211700 Sobic010G211700 Sobic010G211800--Sobic010G211700 Sobic002G360500 Sobic002G360500 Sobic010G211800--Sobic002G360500 Sobic002G417000 Sobic002G417000 Sobic010G211800--Sobic002G417000 Sobic003G031700 Sobic003G031700 Sobic010G211800--Sobic003G031700 Sobic010G211800--Sobic002G045200 Sobic010G211800--Sobic001G074100 Sobic010G211800--Sobic002G362700 Sobic010G211800--Sobic006G241800 Sobic008G096200 Sobic008G096200 Sobic010G211800--Sobic008G096200 Sobic001G381100 Sobic001G381100 Sobic001G074100--Sobic001G381100 Sobic001G074100--Sobic003G031700 Sobic001G074100--Sobic002G362700 Sobic001G074100--Sobic006G241800 Sobic001G074100--Sobic010G211800 Sobic001G074100--Sobic002G045200 Sobic003G291000 Sobic003G291000 Sobic001G074100--Sobic003G291000 Sobic009G124800 Sobic009G124800 Sobic001G074100--Sobic009G124800 Sobic001G074100--Sobic010G211700 Sobic010G165100--Sobic002G246000 Sobic010G165100--Sobic001G389600 Sobic010G165100--Sobic002G142500 Sobic010G165100--Sobic002G045200 Sobic006G274866 Sobic006G274866 Sobic010G165100--Sobic006G274866 Sobic010G165100--Sobic002G403000 Sobic010G165100--Sobic006G032800 Sobic010G165100--Sobic002G311000 Sobic004G243800 Sobic004G243800 Sobic010G165100--Sobic004G243800 Sobic006G241800--Sobic003G291000 Sobic003G018700 Sobic003G018700 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic006G241800--Sobic001G381100 Sobic006G241800--Sobic001G074100 Sobic001G074000 Sobic001G074000 Sobic001G522300--Sobic001G074000 Sobic007G116800 Sobic007G116800 Sobic001G522300--Sobic007G116800 Sobic001G493900 Sobic001G493900 Sobic001G522300--Sobic001G493900 Sobic001G522300--Sobic003G031700 Sobic001G522300--Sobic002G362700 Sobic001G286400 Sobic001G286400 Sobic001G522300--Sobic001G286400 Sobic009G235700 Sobic009G235700 Sobic001G522300--Sobic009G235700 Sobic009G129700 Sobic009G129700 Sobic001G522300--Sobic009G129700 Sobic004G283800 Sobic004G283800 Sobic001G522300--Sobic004G283800 Sobic002G362700--Sobic003G031700 Sobic002G362700--Sobic001G074100 Sobic002G362700--Sobic001G522300 Sobic002G362700--Sobic004G164700 Sobic010G241100 Sobic010G241100 Sobic002G362700--Sobic010G241100 Sobic003G032200 Sobic003G032200 Sobic002G362700--Sobic003G032200 Sobic002G362700--Sobic010G211800 Sobic003G338200 Sobic003G338200 Sobic002G362700--Sobic003G338200 Sobic002G362700--Sobic002G045200 Sobic002G311000--Sobic006G241800 Sobic002G311000--Sobic003G291000 Sobic003G078300 Sobic003G078300 Sobic002G311000--Sobic003G078300 Sobic002G311000--Sobic002G142500 Sobic002G311000--Sobic002G045200 Sobic002G311000--Sobic010G211800 Sobic002G311000--Sobic001G074100 Sobic002G311000--Sobic010G165100 Sobic006G257200 Sobic006G257200 Sobic002G311000--Sobic006G257200 Sobic002G142500--Sobic006G274866 Sobic002G142500--Sobic006G257200 Sobic002G142500--Sobic001G389600 Sobic002G142500--Sobic010G165100 Sobic002G142500--Sobic002G311000 Sobic002G142500--Sobic009G235700 Sobic002G142500--Sobic002G045200 Sobic002G142500--Sobic002G246000 Sobic002G142500--Sobic006G241800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.