Gene annotation
Transcriptome id Sobic.006G032800.1
Synonym Sb06g003350
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
glycosyl hydrolase family 10 protein, putative, expressed
UniProt C5YDA2
Pfam PF00331
Panther DB PTHR31490 PTHR31490:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT4G38650 : Glycosyl hydrolase family 10 protein
RAP-DB (Rice) LOC_Os05g23924.1 : glycosyl hydrolase family 10 protein, putative, expressed
MaizeGDB (Corn) Zm00025a055701
Brachypodium KQJ81981 , PNT60772
Barley HORVU2Hr1G011550.8 , HORVU2Hr1G011550.9 , HORVU2Hr1G011550.4 , HORVU2Hr1G011550.5 , HORVU2Hr1G011550.6 , HORVU2Hr1G011550.7 , HORVU2Hr1G011550.1 , HORVU2Hr1G011550.2 , HORVU2Hr1G011550.3 , HORVU3Hr1G007460.6 , HORVU3Hr1G007460.7 , HORVU3Hr1G007460.4 , HORVU3Hr1G007460.5 , HORVU3Hr1G007460.2 , HORVU3Hr1G007460.3 , HORVU3Hr1G007460.1 , HORVU2Hr1G011550.14 , HORVU2Hr1G011550.12 , HORVU2Hr1G011550.13 , HORVU2Hr1G011550.10 , HORVU2Hr1G011550.11
Wheat TraesCS2B02G075000 , TraesCS3B02G045600 , TraesCS2A02G061600 , TraesCS3A02G038200 , TraesCS3D02G041700 , TraesCS2D02G060800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G044200 glycosyl hydrolase, putative, expressed K01183: chitinase
2 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
3 Sobic.005G188500 expressed protein -
4 Sobic.006G233600 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
5 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
6 Sobic.009G154100 expressed protein -
7 Sobic.001G389600 expressed protein -
8 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
9 Sobic.007G012800 Leucine Rich Repeat family protein, expressed -
10 Sobic.007G189400 BEE 1, putative, expressed -
11 Sobic.007G142300 expressed protein -
12 Sobic.005G209900 expressed protein -
13 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
14 Sobic.010G165100 expressed protein -
15 Sobic.005G196500 embryogenesis transmembrane protein, putative, expressed -
16 Sobic.002G382500 heavy metal-associated domain containing protein, expressed -
17 Sobic.008G035400 stress responsive A/B Barrel domain containing protein, expressed -
18 Sobic.001G488400 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659850)@bHLH family protein, putative, expressed -
19 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
20 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase


Gene co-expression network
sample Sobic006G032800 Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic006G032800--Sobic006G044200 Sobic010G107200 Sobic010G107200 Sobic006G032800--Sobic010G107200 Sobic005G188500 Sobic005G188500 Sobic006G032800--Sobic005G188500 Sobic006G233600 Sobic006G233600 Sobic006G032800--Sobic006G233600 Sobic003G018700 Sobic003G018700 Sobic006G032800--Sobic003G018700 Sobic009G154100 Sobic009G154100 Sobic006G032800--Sobic009G154100 Sobic001G389600 Sobic001G389600 Sobic006G032800--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic006G032800--Sobic001G478100 Sobic007G012800 Sobic007G012800 Sobic006G032800--Sobic007G012800 Sobic008G035400 Sobic008G035400 Sobic006G044200--Sobic008G035400 Sobic001G488400 Sobic001G488400 Sobic006G044200--Sobic001G488400 Sobic006G044200--Sobic005G188500 Sobic004G248100 Sobic004G248100 Sobic006G044200--Sobic004G248100 Sobic006G044200--Sobic006G032800 Sobic003G116100 Sobic003G116100 Sobic006G044200--Sobic003G116100 Sobic007G189400 Sobic007G189400 Sobic006G044200--Sobic007G189400 Sobic002G382500 Sobic002G382500 Sobic006G044200--Sobic002G382500 Sobic002G068400 Sobic002G068400 Sobic006G044200--Sobic002G068400 Sobic005G209900 Sobic005G209900 Sobic010G107200--Sobic005G209900 Sobic005G196500 Sobic005G196500 Sobic010G107200--Sobic005G196500 Sobic010G107200--Sobic006G233600 Sobic010G107200--Sobic009G154100 Sobic010G107200--Sobic006G032800 Sobic007G142300 Sobic007G142300 Sobic010G107200--Sobic007G142300 Sobic010G107200--Sobic001G389600 Sobic010G107200--Sobic001G478100 Sobic005G147800 Sobic005G147800 Sobic010G107200--Sobic005G147800 Sobic005G188500--Sobic001G488400 Sobic005G188500--Sobic006G044200 Sobic005G188500--Sobic007G189400 Sobic005G188500--Sobic006G032800 Sobic005G188500--Sobic007G012800 Sobic005G188500--Sobic008G035400 Sobic010G065700 Sobic010G065700 Sobic005G188500--Sobic010G065700 Sobic005G188500--Sobic005G209900 Sobic005G188500--Sobic010G107200 Sobic006G233600--Sobic005G196500 Sobic006G233600--Sobic010G107200 Sobic006G233600--Sobic001G478100 Sobic006G233600--Sobic005G209900 Sobic006G233600--Sobic006G032800 Sobic006G001400 Sobic006G001400 Sobic006G233600--Sobic006G001400 Sobic006G233600--Sobic007G142300 Sobic006G233600--Sobic009G154100 Sobic006G233600--Sobic007G012800 Sobic010G020600 Sobic010G020600 Sobic003G018700--Sobic010G020600 Sobic006G241800 Sobic006G241800 Sobic003G018700--Sobic006G241800 Sobic003G018700--Sobic004G248100 Sobic002G164700 Sobic002G164700 Sobic003G018700--Sobic002G164700 Sobic001G381100 Sobic001G381100 Sobic003G018700--Sobic001G381100 Sobic004G317200 Sobic004G317200 Sobic003G018700--Sobic004G317200 Sobic003G018700--Sobic006G032800 Sobic003G018700--Sobic006G044200 Sobic001G074100 Sobic001G074100 Sobic003G018700--Sobic001G074100 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic002G315000 Sobic002G315000 Sobic009G154100--Sobic002G315000 Sobic009G154100--Sobic007G012800 Sobic002G179700 Sobic002G179700 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic005G227050 Sobic005G227050 Sobic009G154100--Sobic005G227050 Sobic001G221900 Sobic001G221900 Sobic009G154100--Sobic001G221900 Sobic009G154100--Sobic006G032800 Sobic002G403000 Sobic002G403000 Sobic001G389600--Sobic002G403000 Sobic010G165100 Sobic010G165100 Sobic001G389600--Sobic010G165100 Sobic001G389600--Sobic001G478100 Sobic002G045200 Sobic002G045200 Sobic001G389600--Sobic002G045200 Sobic001G389600--Sobic010G107200 Sobic002G142500 Sobic002G142500 Sobic001G389600--Sobic002G142500 Sobic002G246000 Sobic002G246000 Sobic001G389600--Sobic002G246000 Sobic002G428000 Sobic002G428000 Sobic001G389600--Sobic002G428000 Sobic001G389600--Sobic006G032800 Sobic001G478100--Sobic001G389600 Sobic001G478100--Sobic006G233600 Sobic001G478100--Sobic010G107200 Sobic001G478100--Sobic002G403000 Sobic010G143300 Sobic010G143300 Sobic001G478100--Sobic010G143300 Sobic001G478100--Sobic006G032800 Sobic001G478100--Sobic005G196500 Sobic001G478100--Sobic007G142300 Sobic001G478100--Sobic010G165100 Sobic007G012800--Sobic005G209900 Sobic007G012800--Sobic001G488400 Sobic007G012800--Sobic009G154100 Sobic009G134000 Sobic009G134000 Sobic007G012800--Sobic009G134000 Sobic007G012800--Sobic005G188500 Sobic007G012800--Sobic010G107200 Sobic007G103800 Sobic007G103800 Sobic007G012800--Sobic007G103800 Sobic007G012800--Sobic006G032800 Sobic003G277200 Sobic003G277200 Sobic007G012800--Sobic003G277200
Octagon: transcription factors


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